BtaINT0039305 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016779 | CLIP1
Description
CAP-GLY domain containing linker protein 1 [Source:HGNC Symbol;Acc:HGNC:10461]
Coordinates
chr17:55312145-55314479:+
Coord C1 exon
chr17:55312145-55312261
Coord A exon
chr17:55312262-55314421
Coord C2 exon
chr17:55314422-55314479
Length
2160 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
GTCTGATTGTTTTTCTTTAGAAA
3' ss Score
8.28
Exon sequences
Seq C1 exon
GCTAGTAGCATCACCAAAGAGCTGCAGGGAAAAGAGCTAATGCTTAATAACCTTCAGGAAAACTTGAGTGAAGTCAGTCAAGTGAAAGAGGCTTTGGAAAAAGAACTGCAGACTTTG
Seq A exon
GTAAGTACCTGTCAGGAATCTGAATCTCAGGGTTTCTGGCCAATTTGAATCATTCCTGTTTTAAAAAAACACACGAAAATTTCTATAAAGAAAGAAGTATGGCACCTATTTCCTTTCTTTTGCAAAGTATTGATTGGCTGATAATCAGGGGAATTGGATCAAACCCAAACTAGCAATAAAGGTAAGTATTGCTTTTTTTAAAATCTGTCCTTTGCCTCTGGTAATGCATTGACGTTTTGACATGTTGCTGACCACTTAGTTTCACTAAACACGGGGGCCTTCCAAGTTATGTTAGGTTTCATGTGTGGCTCTTGCCCTGTGCCTTGTCGTCCCTGCCCTGAGACAGCAAAGCCGGCAAGCTCCCTGGGTCACAGGCAACCTCCGTTAGCAAGGCAGTGATGTTTGTGCGTGCTCGGTCGTGTCCGACTCTCTGTGACCCCATGGACCGTAGCCCACCAGGCTCCTCTGTCCATGGGATGCTCTAGGCAAGAATGCTGGAATGGGAGGTCTTCATGTGCCTTCTTGCTTTCCACTTTTTATACCTCTGTGCTAATAGCAGTCGTGGGATAAAGGTGTTTTGATATTTTTTTGATTTAAATGCCAATATTACATATTTCTACTTTTTAAAATGTTAATACGTAGTTAACTGCACTATTCATTATGATAGCTACCATCCACTTGGCTGTATAAATTTGAATTAATTAAAATTTAATAAAATATAAAATTCGAGACTTTCCTCATGGTCCAGTGGCTAAGACTCCACATTCCTAATGCAGAGGGCCCAGGTTTGATCCCTGATCAGGGAACTAGATCCCATGTGTTCCAACTAAGAGTTTGCATGCTGCGACTAAGACCTAGTGCAGCCAAATAAATATTTTTAAAAATACAGAAAATTCAGTTCCTCCATTGTGCTAGTCACATTTTAAGGGCTTGATAACTCCACGTGGCCAGTGGCTGCCAACTGACCAACACTATCATTGTAGAGAGTTCTGATGAACCCCCAGTTTTGATGCATAGTATTTCAGGTACATTTTGAGAAAAGTTGGCCTGGAGATTACCATTTTTTAATATAGTGTCCTTTAAGAAAATGCATTTGGGGTGTCGTGCCATTTCTCTGCCCTCCTCCCCAAACTTTCAGGATGTCTTACTGTTTGTTTTTCAAGTTAGAGTATTTCTCTGTGTCCTCTGAAGAGAAAACATGCCTCCTGAAGTCTGGCCTTGGGAATAACGCAGGTGGACAACCTGTGGGCTTTGATGGGCTTGTGGTTTGTGAGCCCATTTTTTAAATCAAATATTCATTTAAAAATTCACTTGGTGTCTCTAGCTCAGAATTCATCTCAGGAGAATCAGGAGAGGGGTTTTATCCTGCCCTCCTGTCATATTTAGAAAAGATAGTGAGTGAGCGATGGACTTTTTAATGTAAAGTAGTTGACACAGATCTAGTTTCCAGATACTAGGTTCTAATTATTCTTAGATGTAAAACATGCAAGAACTCAGATCCCCAGACGTAGAAAACAAACTTACGGTTACCAAAGTGGAAAGGTGGGAGAAAGAGATAAGTTAGGAGCTTATCATTGTCATATACACATGACTATATAAAAAATAGATAACCAACAAGGACCTAGTATAGCACAGGGAGCTATACTCAATGTTTTGTAATAACCTATAAAAGAGTTTGAAAAAGAATAGATAGTTGTGTGTATATAACAGAATAACTTTGCTGTACACCTGAAACTAACATAGCATTATAAATCAACTAAACTTCCAAAAAAATATATTAAAAAAAAATTCTGAACCCTGTTTGCTGTCTCAGGCAGATTTCTGGAGCAGTTCTGCTACTTGAGGGTAGCAACATGCAGAAAAAGTATACACGTGGCACCACATGTACATACGCACATGTGCATGTACTGACATAAGTGTGCATATCCATACACATATACAGACATATGTGCATGCCCAGGCAGGCACACAGACACAAACCTCATTCACTCGTGTGCACACATGCATGGTACGCATATGGTAGTAATTGACACCTACATGTTTTAAGCATAGGTTAGCTTTAATGAAACAAAACTAGCAACAAAAAATAATGTTACGGTTATTGAAACTTTTTATAATTTGAGATCTGTCTATTCTGAATGTCTGATTGTTTTTCTTTAG
Seq C2 exon
AAAGAAAAGTTTGCTGATGCTTCAGAGGAGGCAGTCTCTTTTCAGAGAAGTATGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016779:ENSBTAT00000022319:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=NA C2=0.550
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development