BtaINT0040496 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112492854-112495794:+
Coord C1 exon
chr8:112492854-112492916
Coord A exon
chr8:112492917-112495587
Coord C2 exon
chr8:112495588-112495794
Length
2671 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGCC
5' ss Score
3.58
3' ss Seq
TCCTCCTGTAACGCTTCCAGGCC
3' ss Score
7.53
Exon sequences
Seq C1 exon
GATGAGCACTGGCGTGGAGAAGCGCTCCGGGAGAAGCTGCGGCACCGTGAGGACCGACTCAAG
Seq A exon
GTGGCCCTTTTGAAAGAAAAAAAAGTATAAGATGCTTGGCCTGTTGAGAGCGGGGAAAGTGCTCTGTCGCAGCCGTCACAACAGATTTATAGGTTACATGTTCGAAGCTCAGAGAGGTTGGCATCACAGTTAGTCAGCACCAAGGTCAGGGTTCAGACCCACGAGCTCTGGTGCTCAGCGCAGGGTTCCTAACCCTGGGTAACGCTGCTTTGCCTCAGTTGAAACTCACAGGACCTGCAGACAGAAAATACAGATGCGCTGATCAAAACACAGCTCACAGGCCAGTGATCGGGGGAGGGATTGGGGAAACCAGAAAAGTAGGCTTGGGTGTCAAATGAGAAGCTGTTTGGCTCAGGATATGTTGAGCTTGAAGGCTTCATGAGACACAGGGAAGGGTGTCTGTCTGTAGGCAGCTGAAAATAGGTGTCTAGGATTTAGTCGTAAGTTCAGTTCAGTTCACTCGCTCAGTCGTCCGACTCTTTGCAACCCCATGCACCGCAGCACACCAGGCCTCCCTGTCCATCACCAGCTCCTGGAGTCCACCCAAACCCATGTCCATCGAGTCAGTGATCCCATCCAACCATCTCATCCTCTGTCGTCCTCTTCTCCTCCTGCCCTCAATCTTTCCCAGCATCAGGGTCTTTTCAAATGACTCCACTCTCTGCATCAGGTGGCCAAAGTATTGGAGTTTCAGCTTCAACATCAGTCCCTCCAATGAACACCCAGGACTGATCTCCTTTAGGATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAATTCTTCTGTACTCAGCTTTCTTTATAGTCCAACTCTCACATCCATACATGACTACTGGAAAAACCATAGCCTTGACTAGATAGACCTTTGTTGGCAAAATAATGGCTCTGCTTTTTAATATGCTGTCTAGGTTGGTCATAACTTTCCTTCCAAGGAGCAAGCGTCTTTTAATTTCATGGCTGCAATCACCATCCTCAGTGATTTTGGAGCCCAGAAAAATAAAGTCAGCCACTGTTTCCCCATCTATTTCCCATGAAGTGATGGGACCGGATGCCATGATCTTAATTTTCTGAATGTTGAGCTTTAAGCCAACTTTTTCACTCTCCACTTTCACTTTCAAGAGGCTCTTTAGTTCCTCTTCCCTTTCTGCCATAAGGGTGGTGTCATCTGCATATCTGAGGTTATTGATATTTCTCCCGGCAGTCTTGATTCCAGCTTGTGATTCCTCTAGCCCATTGTTTCTCATGATGTACTCTGCATAGAAGTTAAATAAGCAGGGTGACAATATACAGCCTTGACGTACTCCTTTTCCTATTTGGAACCAGTCTGTTGTTCCCTGTCCAGTTCTAACTGTTGCTTCCTGACCTGCATACAAATTTCTCAAGAGGCAGGTCAGGTGGTCTGGTATTCCCATCTCTTTCAGAATTTTCCACAGTTTATTGTGATCCACGCAGTCAAAGGCTTTGGCATAGTCAATAAAGCAGAAATAGATGTTTTTTCTGGAACACTCTTGCTTTTTTGAGGATCCATCAGATGTTGGCAATTTGATCTCTGGTTCCTCTGCCTTTTCTAAAACCAGCTTGAACATCTGGAAGTTCAGTGGTTCATGTATTGCTGAAGCCTGGCTTGGAGAATTTTAAGCATTACTTTACTAGCGTGTGAGAGGAGTGCAATTGTGGGGTAGTTTGAGCATTCTTTGGCATTGCCTTTCTTTAGGATTGGAATGAAAACTGACCTTTTCCAGTCCTGTGGCCACTGCTGAGTTTTCCACATTTGCTGGCATATTGAGTGCAGCACTTTCACAGCATCATCTTTCAGGATTTGAAATAGCTCAACTGGAATCCCATCACCTCCACTAGCTTTGTTCGTAGTGATGCTTCCTGAGGCCTGACTTAAAATGTAGGAGTGAAGAGTATAGTGGAGAGCTGGGAATGAGTGAGGCGGTTAGAACCAGAGAGGACAGCGTGCATCGCTGGGGAGCAGCCACTCGCCTCGAGGGCTGAGAGGGAGCCACGTGCAGTCCCGAGTGAGAGAAGGCGCTTTATATCAGATAGCCTCTGGCCACACGTGGCTGTTCAAATGGAAATTCACTGTCATTAAACCAGGTTAAAAATTCAGGTACCACATTTCACGTGCTTGGCAGCCACACGATTAGCGGTCACCATAGAAGGCAGCAGATGTAGACCAGGGAACATTCCTGTCGTCACAGAGCGTTCTGTGGGACAGTGCTTGCTGGCAGCGTTAATTAGAGGATCATTTCAGAGGTGCCGTGGGGAAGCCAGGAAGCAGTGTGGGGTTGAGGATTCCAAGCACTGGGAGACACTGACGATAGCACTGTAAACCCATCGTCTGAGTCTGAGCAGGCGTCCAGCGAGGAGGGTGCGGAAACCCCGCGTGTTGTGACAGTGGAGCGCACAGGCTGAGTTTAAGGTGCAGTGACGACACGCGGAAGAGCCGTCTGGCACCTGCCCGCCTGCTCCGCCTTTTTAACTTTTGAAGACAAGGGTTTTCAGCAGCCACTTCTGTGTTCTGACAGATTTGCCTTTCAAATGTTAAACGTGAGGAAGCTACTCAGTACTAGTTCTGGCACATTCCCCCTGTAAAGCCCTAAGTCCTCCTGTAACGCTTCCAG
Seq C2 exon
GCCCAGCTCCGACACTGTATGTCCAAGCAGGCAGAGGTGTTAAGCAAAGGGAAGCGGCAGACCGAGGGCACGTTACACAGCCTGAGGAGGCAGGTCGACGCCTTAGGGGAGCTGGTCACCAGCACGTCTGTGGAGTCCACGTCGTCAGCCACTCTGTCTCAGCTCGAATCTTCCCTTGCAGAGGACTCCCATCTTGGACCAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417:ENSBTAT00000061592:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.476 A=NA C2=0.797
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]