HsaINT0033519 @ hg38
Intron Retention
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121173675-121175224:+
Coord C1 exon
chr9:121173675-121173737
Coord A exon
chr9:121173738-121175017
Coord C2 exon
chr9:121175018-121175224
Length
1280 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGCC
5' ss Score
-1.7
3' ss Seq
AGTCTTATCACACTTTTCAGGCC
3' ss Score
5.7
Exon sequences
Seq C1 exon
GATGAACACTGGCGTGGAGAAGCACTCCGGGAGAAACTGCGTCACCGGGAAGACCGACTCAAG
Seq A exon
GTTGCCCTTTAAAACAAACAAAAAATCAGTATGAGATACTGGGCACATTGGGGAGGGGAGGGGAAAGTTACATTTACCTGATGCTTTCACATCCATGCTGTTGCAGCCCTGCCAGCAGTGTCAGGGATGGCATGTCTGAAGCTTCGAGGAGTTGGTGTCACACAGTAAATGGCAATCAGTGTTCAAAACCATGACTTCTTGTGTTGACTCCAGTGTTCTTTAACCTATGTAATGCTGCTTTACCTCAGCTAGAACCGATAGAATCTAAGTATTTGGGAGAGGAAGTAGAAACACAGTGATGAACTGTAAGGTTATCATAGGCCAGTGGTGGCAGGAAAGATTTGGGATACTGGAAAAGTAGGCTGAATGTCAGGTAAGGAATTGTTTGGCTCAGAACATGTTGACTTTGAAGGCCTTGTGAGATATCCAGGGAAGGATATCTGTCTGTAGGCAGCCAAAAATAGGAGTCTAGGATTACTGATCAGTGTTGACCTAAAGATTTGAGAGTTAAGAGTATAGGTGGGAGGTTACATTTATGTGGGGGGAATGGCTATGTAGACAGCATGGGATGAGAGAGTGCAGTGCTATAGTATTGAGTGGAGCCCTGTGATGTCCAACAATAGTCTCCAGCCATGTGTGGTTATTTAAATTTTAATAAATTATAATTAAGTTAAAAATTCAGTTATTCATTTGCCACATTTCAAGTGCTTAATAGCCACATGTGTCTAGTGGCTTCTATATTTATAGCCAGAGGTAGAACATTCCCATCATTGCAGAAAGTTCTGTTGGACAGCGCTGCTATAGACTTTGAGAGAATAATTTGATTATAGCAGGGGCAAAAGCCAAAAAGTAGTATGAAGTTGAGGATTAAATACCTAATCATTTATAGACAAGAAACTAAGACTTAGGAAAAAATACATAATCAGGAGACACTCCAGTTGTCAAGTATAAACTGATCTTCTCAGTCATAACAGAAAAGGAAAAAAGAGATGAGGCAATAATTTAATGGAGAAGCAAGGGATACAGAAATCCTAAGCACTGCTAGCATGGAAAAACTGGGCCAAGTGAAAGACCCCGTTAATGACAACACAGAAAAGTAAAGGTTTATGCACACTAAGTATCCACCTGGCACCTCCTACAATTCTTTTTAAAGATGAGCATTTTTGACAGCCATTCCTACTGTTAGCCAGATTTGCCTATCAAATGTATGTGAGGAAGCTGAGCGGCAGTTCTGGTACATTTCTTCTGTGTAAAACCCTAAGTCTTATCACACTTTTCAG
Seq C2 exon
GCCCAACTCCGACACTGTATGTCCAAGCAAGCAGAAGTATTAATTAAAGGAAAGCGGCAGACAGAGGGCACTTTACACAGTTTGAGGAGACAAGTAGATGCTTTAGGGGAATTGGTCACCAGCACCTCTGCAGATTCAGCGTCATCACCCAGTCTGTCTCAGCTGGAGTCTTCCCTCACAGAGGACTCTCAACTTGGACAAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397:ENST00000373850:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=NA C2=0.679
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAACACTGGCGTGGAGAA
R:
CTGATTTTGTCCAAGTTGAGAGTCC
Band lengths:
270-1550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development