DreINT0007154 @ danRer10
Intron Retention
Gene
ENSDARG00000088492 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr5:62706975-62709286:-
Coord C1 exon
chr5:62709224-62709286
Coord A exon
chr5:62707357-62709223
Coord C2 exon
chr5:62706975-62707356
Length
1867 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
3' ss Seq
TGGTTGTTTATGGTTTGCAGGTT
3' ss Score
6.81
Exon sequences
Seq C1 exon
GATGAACAGTGGCGAGGAGAAGCGCTGAGAGAGAGACTGAGGCAGCAGGAGGACCACCTGAAG
Seq A exon
GTGAAGCTACAAATATCATTCGACTACAAATGATACAATGTCAAAATGTGCTCAGCTTTTCTCCTGGAGAGCTTCTGTCATGCAGAATCTGATCAAATTAGTTAGAATTTACTCTTCAGGAATTAGTCCTTAACGATTAAAACCAGCAAGCATTTATTGTGTTTAATAGATGTCTGTACATAAACATAAATTTAGACGAATGAATAACCTCATAGTCTGCAATTACACAGTGTGCATGATTTGTTTGATGACTTGTGTATTTTTGAACTGTTAGATTTACACTGACAGCCCAAGTAGAGCTTTGTTTTAGCCAACCCTGCTGAAAAATCCAGCTTAAACCAGCCTAGGCTGGTTGACTGGTTTTAGCTGGTCTACCAGGCTGGTTTTAGAGGGGGTTTGGCCACTTCCAGGCTGGTTTCCAGCCATTTCCAGCCTGGTCTTAGCTGGTAAGGCTGGAAAATTACCAGCCAAATCCAGCTAAAACCAGCTTGACCAGCCTGGTTTAAGCTGGATATAGCTGATTTTGGCTGGACTCCCAGCTTGGCTATGCTGGTCAAGCTGGTTTTAGCTGGTCATCTCCCAGCCTGACCAGCTAAGACCAGGCTGGAAATGGCTGGAAACCAGCCTGGAAGTGGCCAAAACCCCTCTAAAACCAGCCTGGTTGACCAGCTAAAACCAGCCAACCAGCCTAGGCTGGTTTAAGCTGGATTTTTTTAGCAGGGAAGTCTGTTAGAAGTCAGCAAAACACAAAACCAAATGTATAGCCACTACATACAATGGACAGGGTGGGCCATTTATATGGATACACCTTAATCAAATGAGAATAATTGGTTATATTGACGTCCTGATTGTGGCACATTAGTATATGTGAGAGGGAAAACTTTTCAAGATGGATGGTGACCATGGTGGCCATTTTGAATTCGGCCATCTTGGATCCAACTTTTGTTTTTTCAATAGGAAGAGGGTCATTTAACACATCAAACTCATTGGGAATTTCACAAGAAAAACAATGGTGTGCTAACACGTTTTAACGAAACTTTATTCTTTCATGAGTTATTTACAAGTTTCTGACCACTTATAAAATGTGTTCAGTGTGCTGCCCATTGTGTTGGATTGTCAATGCAACCCTCTACTCCCACTCTTCACACACTGATAGCAACATCGCAGGAGAAATGCCAGCACAGGCTTCCAGTATCCGTAGGTTCAGGTGCTGCACATCTTACATCTTCACACCATAGACAGCAAAGATAGTGGGGCCATTCTTCATCAATGGAAACCTCAAGGCCACTGGATATTTGAAATTGCTACATGTGGATGTGTTTCCCTCTTTATGGACTAAGGCTGGCACGTTCTCTGAGTGTTTTCAGCAAGATGGTGCACCACCAGATTATGGGTGTCAGGTCTGAGCATTCCTAGATGAACAGTTTCCTAAAAAGTGGATTGGTCGTCGTGGGCCAATTGAATGGCCCCTAAGGTCTCCCAATCTGACCCCCTCAGACTTTTATCTTTGGGGTCATCTGAAGGCAATTGTCTATGGTGTGAAGATACAAGATGTGCAGCACCAAGAATGTCATTAGAACACAGTAATGCATTTCCGTGGAACGAGTTACACCCAGCTCTGAGCATATAATACAGTAGCGTAGTACATTTTTTAGCCATATAACTGGCGGTTTTAGGTAGACTACTAGTGGTTTTAGTGTTAAACAGAAACAAAGAAACGCCCATTGCCCAAGCAAGTGTTTTGGTCCAGGTTGGAGTTAAACTCTGCAAGAATTTATTTAACCTATCCAAAAGCAGAATTGGACACCTCTGTGATACACAGATTTTCCAACTGTAACTGTGTGATTTGGTTGTTTATGGTTTGCAG
Seq C2 exon
GTTCAGCTGCGCAGACGCATGTTCTCCCAGCAGGAGGCTCTGAGTCAGCGAAGACTGCAGACCGAGGGCAGCATTCAGGGCCTGCGCAGACGCGTGGACAAACTAGACCAGCTCCTCGGCAGCTCTTCCAAAGACTGCTCTTATCTGTCTGACCAGGAACTTCTGCCAAAACACACCAATGGACGAGATCGGAAGAAATGGTCCGCTGATCCTTTTGAATTGAAATAAGCATTCATTAGCACTTTACTTCACATACATGAAAGGAAAAAGTCCCATTATTTCTGTCAGATTATGAAAGGAGATGCAGTCAGAGGAGCAGTTTGATTCTGCAGGTACCAGAAAGAGCACTGAGGCTGGATATACTACAGCTTAAAAAAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088492:ENSDART00000131064:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.767 A=NA C2=0.551
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAGAGACTGAGGCAGCAG
R:
ACTGCTCCTCTGACTGCATCT
Band lengths:
356-2223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]