RnoINT0038584 @ rn6
Intron Retention
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14368428-14369198:+
Coord C1 exon
chr3:14368428-14368490
Coord A exon
chr3:14368491-14368991
Coord C2 exon
chr3:14368992-14369198
Length
501 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGAC
5' ss Score
1.86
3' ss Seq
CATCTGATAACATTTTCCAGGCT
3' ss Score
4.71
Exon sequences
Seq C1 exon
GATGAACACCGGCGTGGAGAAGCACTCCGTGAGAGACTGCGCCACCGTGAAGATCACCTCAAG
Seq A exon
GTTGACTCTTAAAAACCAGAGAAAGCCCCTGAGATAGTTGGCGTGGGAAAAGGTTTCCATGTCCACCCTACTGAAGTGCTCAAGGACACTTACAGATCACACTGTAGACGCTGACCACAGATAGCAAATGGCTGTCAGCATTGAAGACCATTTGAATTCTAGGGCATTGGATATATAGCCCAGTGGTACAGCACTTGTCTAGCACATGCAAGGCACTGGGTCCAACCTAGAATCCTGGTGTGAAGGGCTCTTTAACCTCTATAATGCAGGTCCTTGACATAGGGTCTCTTTGTGTACCCTAGACTATCCTAGAACTACAGGGCAGCCTTGAACTATCTGGCTATCTGGCCTCAGTTTCCCCAGTGCAAAGATTAGTGATTACTGCCATGCCCTACCCTCATTCCTGTTTATTAAAGTCAGACTTACTTATCAAACGTGAAGAAGCTGAGAGTTCAGGAGCGTTTCTTCCGTGTAAACCCCACATCTGATAACATTTTCCAG
Seq C2 exon
GCTCAGCTTCGAGACTCTATGTCTAAGCAAGCAGAAGTATTGATCAAAGGAAAGCGGCAGACAGAGGGCACCTTACACAGTCTGAGGAGACAAGTCGATGCTTTAGGAGAACTGGTCACTAGTACCTCCGTGGACTCAGCACCATCACCCAGTCTGTCTCATCTAGAGTCTTCCCTTGTAGAGGACTCCCAACATGGACATAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015:ENSRNOT00000007776:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.783
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAACACCGGCGTGGAGAA
R:
CTGACTATGTCCATGTTGGGAGT
Band lengths:
270-771
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]