GgaINT0126690 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:9079008-9079864:+
Coord C1 exon
chr17:9079008-9079070
Coord A exon
chr17:9079071-9079657
Coord C2 exon
chr17:9079658-9079864
Length
587 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGCA
5' ss Score
1.02
3' ss Seq
AGAACTAACCATTTGTTCAGGCT
3' ss Score
2.06
Exon sequences
Seq C1 exon
GATGAACAGTGGCGTGGAGAGGCTCTCCGAGAGAAACTGCAGCATCACGAGGATCGGCTGAAG
Seq A exon
GTGGCACATCTCTTACCTTTGCACAGATAGGTCTGCAGGTCCTTTCCAAAAAGAATCTGAACAAGACGGGTGTGTGGGAGATCCTTCTCCAGCTGTCACAGTCACCCCGTACATAATGACTAGCAGCAGAGTATCTTTGGATATCTTGTTAGGTGGGAATAGTAAAAGAAAGCCCAGCAGTGACAGGTTCTATCAAGATGAACAATGTTAAATAATTATAGTTGGCTTTTTGAGTATGCCAGCATGATCCCATCACTTATGTTGTACTGTGGTATGTTAGTAACATAAGAATCGACAATTCACAGGCACTTGTGGCCATTTAAAATAGAGATGATGGCACAGTTAAGGTACAACATATCTGTCATTTCTTTCAAGCAGTTAATGATGAGGTGCCACAGAAATACAGCTTATTTCTGACTTAAAGAGGTGAACTATTTAAAAGCAAGTTGATTTGTAAACCCATTGCCAGCTGCTTGTGACTTGAGAGATTCCAATAGTATGTCCTTTATGCTTTGGCCCCAGACTTCTTAGATGTAGTCTTCAAAATTACACTAACTGGATACAAATAGAACTAACCATTTGTTCAG
Seq C2 exon
GCTCAGCTCCGGCACTGCATGTCCAAGCAAGTAGACGTATTGATCAGAGGAAAACAACAGACACAGGGCACCCTTCACAGCCTGAAGCGACAGGTTGATGCACTGGATGACCTGGTCAGCAGCACTTCCTCAGACTCCCTGTTCCTAGCTGATAGTTCATCAAGTCTGCTATCTCTTCGTGATGCTCTGAGTTTAACAAAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=NA C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAACAGTGGCGTGGAGAG
R:
TTGTTAAACTCAGAGCATCACGA
Band lengths:
262-849
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]