GgaINT0126690 @ galGal4
Intron Retention
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8374352-8375229:+
Coord C1 exon
chr17:8374352-8374414
Coord A exon
chr17:8374415-8375001
Coord C2 exon
chr17:8375002-8375229
Length
587 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGCA
5' ss Score
1.02
3' ss Seq
AGAACTAACCATTTGTTCAGGCT
3' ss Score
2.06
Exon sequences
Seq C1 exon
GATGAACAGTGGCGTGGAGAGGCTCTCCGAGAGAAACTGCAGCATCACGAGGATCGGCTGAAG
Seq A exon
GTGGCACATCTCTTACCTTTGCACAGATAGGTCTGCAGGTCCTTTCCAAAAAGAATCTGAACAAGACGGGTGTGTGGGAGATCCTTCTCCAGCTGTCACAGTCACCCCGTACATAATGACTAGCAGCAGAGTATCTTTGGATATCTTGTTAGGTGGGAATAGTAAAAGAAAGCCCAGCAGTGACAGGTTCTATCAAGATGAACAATGTTAAATAATTATAGTTGGCTTTTTGAGTATGCCAGCATGATCCCATCACTTATGTTGTACTGTGGTATGTTAGTAACATAAGAATCGACAATTCACAGGCACTTGTGGCCATTTAAAATAGAGATGATGGCACAGTTAAGGTACAACATATCTGTCATTTCTTTCAAGCAGTTAATGATGAGGTGCCACAGAAATACAGCTTATTTCTGACTTAAAGAGGTGAACTATTTAAAAGCAAGTTGATTTGTAAACCCATTGCCAGCTGCTTGTGACTTGAGAGATTCCAATAGTATGTCCTTTATGCTTTGGCCCCAGACTTCTTAGATGTAGTCTTCAAAATTACACTAACTGGATACAAATAGAACTAACCATTTGTTCAG
Seq C2 exon
GCTCAGCTCCGGCACTGCATGTCCAAGCAAGTAGACGTATTGATCAGAGGAAAACAACAGACACAGGGCACCCTTCACAGCCTGAAGCGACAGGTTGATGCACTGGATGACCTGGTCAGCAGCACTTCCTCAGACTCCCTGTTCCTAGCTGATAGTTCATCAAGTCTGCTATCTCTTCGTGATGCTCTGAGTTTAACAAAAACACAGGTAACCTCGAGTGCAATAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAACAGTGGCGTGGAGAG
R:
TTGCACTCGAGGTTACCTGTG
Band lengths:
286-873
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]