BtaINT0041495 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019807 | COL27A1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MTP1]
Coordinates
chr8:105181925-105182552:+
Coord C1 exon
chr8:105181925-105181978
Coord A exon
chr8:105181979-105182489
Coord C2 exon
chr8:105182490-105182552
Length
511 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
CCCTTCTCCATCTCCCGCAGGGC
3' ss Score
11.93
Exon sequences
Seq C1 exon
GGTGACTCTGGTGAGATGGGATTCCCAGGAATGGCTGGCCTCTTTGGACCCAAG
Seq A exon
GTACAGATTCTCTATTCCTCTTGGGGTCCTGTCCATCCACCTGCTTGTTCACTTATTATTTCTTGGGCACAAATATTTCTTGTTCACAAATATTTCTTGGGCATTTGCAATGGGGGCTGGAACACAGCCAGAATCTAGCATGAACACCCTTGTCTCCCAGCCTAATGTTCCAGCAGACCTGGGTTCTAAGCCCAGCTCCGCAGTTTATCTGCTCTGTGCCTGAGCAAGTTACTTGGTCTCTCCAAGCCTCAGTTTTCTCATCTATAAAATGGGCACAGTAGCAGCAAAGGGTTGTTACAATGAAGATTAAACCTACACCATTTAGCGCTGAGCCAGCACGCTGCCTGCTGCATACTAATTGTGGACATTTGTTCCTCTTTCTGGAGCCTCTCAGGGAAGGCCTCTCTTGACCGGGAGGGCAAAAGTTGGGCAGACCCCAGGGGTGGCGGAGCTGCTGGAGCCCTTGCCCAGCGGCCACCCAGACACAGCAGCCCTTCTCCATCTCCCGCAG
Seq C2 exon
GGCCCCCAAGGAGACGTCGGTTTCAAAGGCATCCAGGGCCCTCGGGGGCCTCCTGGCTTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019807:ENSBTAT00000001200:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0139113=Collagen=PU(8.2=23.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]