GgaINT0125601 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NHH4]
Coordinates
chr17:4780120-4780871:+
Coord C1 exon
chr17:4780120-4780173
Coord A exon
chr17:4780174-4780808
Coord C2 exon
chr17:4780809-4780871
Length
635 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CATCTCATTTTTGCTTGCAGGGA
3' ss Score
9.49
Exon sequences
Seq C1 exon
GGAGACTTTGGGGAGGCAGGATTCCCAGGGATCGCGGGCATCTTTGGGCCAAAG
Seq A exon
GTAAGAGGTGACCCGGTGACCGGTTGGCTTCCCAGTCCCTCTTTTCTGGGAACAGACACTGCAATACCTACTGAAAGTTATTTGGTAGCAGCTCTGCAGAAACTACTGAAATTCGATTGTGATTCCAGCTTCAAGTCTGTATATCTTCAAATAATCCTCGAGTATTGCATTACATATGCTCTGATGAAGCTTATTTCTATTAACTACGCTGTAGATGGAAGATGGGTGTTCTATAGACCCCCCCTCCACCTGAAGATATTTCAATCATAGAATCATAGGATCAGTAACCTTGGAAAAGGCCACTCAAATAACCAACTCCAACCATCAACCCATCACCACCATGCCCACTCAGCCACATCACTCACTGGCACGAGTTCATTTCTCCAACATTAATCATCAGTCGAGAGACTTGACTGGAAATTTGGGCTCATTTGACCAAAATGTAATTTTGATGGGGAAAGGGAACCGGGCTGTTTTCTGTAGAAAGTAAAGGGCTTGCAAAACAGGAGTGGAAAAAGAATGTTTTTAGTCAGACCTTCCAATTCCCATGTAGTAGAGGCAGCAGAGCTGCAATCCAGAGCATCAACGTGGGGTGCATTTATTAATGGGCTCTGACATCTCATTTTTGCTTGCAG
Seq C2 exon
GGACCTCCAGGAGACCCCGGTTTCAAAGGCATTCAGGGACCACGTGGCCCACCTGGCATCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006958:ENSGALT00000011272:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0139113=Collagen=PU(3.2=9.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]