BtaINT0042811 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004664 | COQ4
Description
coenzyme Q4 [Source:HGNC Symbol;Acc:HGNC:19693]
Coordinates
chr11:98931357-98931680:+
Coord C1 exon
chr11:98931357-98931463
Coord A exon
chr11:98931464-98931548
Coord C2 exon
chr11:98931549-98931680
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGC
5' ss Score
2.13
3' ss Seq
GCTGTTTTCTTGCCCCGCAGGTG
3' ss Score
12.11
Exon sequences
Seq C1 exon
ACCCGCACCCCCAGGACGTCTGACGGTCCCCGCTGCCATGGCGACACTGCTGCGCGGGGTCCTGCGCCCGCTTTACGCCTTCCGGGGCGGTCCCGGCCCTCCTGCAG
Seq A exon
GCAAGCGGCAGGGGCGCGGGAAGGAGGGCCGGGGACTTGCCCCGCTCCGCTCTTTTGACCGCGCGGCTGTTTTCTTGCCCCGCAG
Seq C2 exon
GTGTTCCCTTCAGAGCCGTGAGCCATGGCACCGGCCTGCTCTACCCCGAACACATCCCCACCTCCGTGCTGCAGAAGGTGCTGCTGGCCGCCGGCTCTGCCGGGATGGCGCTGTACGATCCCTATCGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004664:ENSBTAT00000006120:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=NA C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF050198=Coq4=PU(28.6=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGCGCCCGCTTTAC
R:
ATAGGGATCGTACAGCGCCAT
Band lengths:
174-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development