MmuINT0041072 @ mm9
Intron Retention
Gene
ENSMUSG00000026798 | Coq4
Description
coenzyme Q4 homolog (yeast) [Source:MGI Symbol;Acc:MGI:1098826]
Coordinates
chr2:29643783-29644088:+
Coord C1 exon
chr2:29643783-29643877
Coord A exon
chr2:29643878-29643956
Coord C2 exon
chr2:29643957-29644088
Length
79 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
3' ss Seq
TACCTCTTTTCTGCTCGCAGATG
3' ss Score
10.84
Exon sequences
Seq C1 exon
AACCACGCGGACGTCCGCTGCCATGGCGACCCTGCTGCTGCTTCGCTCCCTGCGCCTCCACCGCAGTCTTCGGCCCCGTACGCGGCCAGCTGTAG
Seq A exon
GTGAGCAGCTCTGATTCCAGTGTCCGCGGCGACCAGAGGGACCGGACTCCTCTCACCTTTACCTCTTTTCTGCTCGCAG
Seq C2 exon
ATGTACCCCTCAGGGCCGGGAGCCATGGCGCCCGCCTGCTGTACCCGGACCACATCCCAACCACCCCGCTGCAAAAGATGCTGCTGGCTGCGGGCGCGGCGGGAATGGCTCTCTACAACCCCTATCGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026798-Coq4:NM_178693:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF050198=Coq4=PU(13.5=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCTTCGCTCCCTG
R:
GTTGTAGAGAGCCATTCCCGC
Band lengths:
180-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: