GgaINT1010233 @ galGal4
Intron Retention
Gene
ENSGALG00000004927 | COQ4
Description
coenzyme Q4 [Source:HGNC Symbol;Acc:HGNC:19693]
Coordinates
chr17:4987205-4987536:-
Coord C1 exon
chr17:4987464-4987536
Coord A exon
chr17:4987385-4987463
Coord C2 exon
chr17:4987205-4987384
Length
79 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
3' ss Seq
GCCACCGCCTCTCCCCGCAGGCA
3' ss Score
12.53
Exon sequences
Seq C1 exon
TTCCGGGGCTGCGCCATGCTGCGGGGGGCGGCCGTGCGGGCCGCGCTGCTGCGGGCGGTGCGCGGCGCTCCGG
Seq A exon
GTAAGGGAACCCCGCGCGGCCCCGCGGTTCGTCCCGAGGGTGCCGTGGCTCTGAGCTCCGCCACCGCCTCTCCCCGCAG
Seq C2 exon
GCAGAGCCGGGTTGGGCCGCGCCGTGCCCCGCGCTGAGGAGGAGGAGGAGGAGGAGGAAGAGCGGCAGCGGGGGGGGCGCGTCCCGCTGTACCCCGGGCACATCCCCACCACCCCGCTGCAGAAAGCGCTGCTGGCGGCCGGCTCGGCGTGCGCGGCGCTGTGGGACCCCTACAGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004927:ENSGALT00000007881:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.492
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF050198=Coq4=PU(13.6=49.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]