RnoINT0040866 @ rn6
Intron Retention
Gene
ENSRNOG00000026691 | Coq4
Description
coenzyme Q4 [Source:RGD Symbol;Acc:1304638]
Coordinates
chr3:8349185-8349673:+
Coord C1 exon
chr3:8349185-8349462
Coord A exon
chr3:8349463-8349541
Coord C2 exon
chr3:8349542-8349673
Length
79 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
3' ss Seq
ACCTCTTTCCTGCCCCGCAGATG
3' ss Score
13.76
Exon sequences
Seq C1 exon
ACGTTATAAATAACGCCTGGTTCACAGCAGTTATCTTACATCAGTGGCAAACAGATCTTGTTGCTTTTCTTCTCATGCTCCTGTCTATATTACAACATCTCCGATCAAAAAAAGCCACAGTGAGTGCAGTTCCCAAGTAGTCTTTTGACTTCTCGGGCCTCCGTCTTACCTGAGGAGCCCCGCCCATCCACCGCGGATGTCCGCTGCCATGGCGACCCTGCTGCTTCGCTCCCAGCGCCTCCACCGCAGTCTCCGGCACCGTACGCGGCCAACTGTAG
Seq A exon
GTGAGCAGCTCTGATCCGGTATCCGTGGCGACCGGAGGAACCGAGCTCCTCTCACCTTAACCTCTTTCCTGCCCCGCAG
Seq C2 exon
ATGTGCTCCTCAGGGCCGCGAGCCATGGCGCCCGCCTGCTGTACCCAGACCACATCCCTACTACGCCGCTGCAGAAGATGCTGCTGGCCGCCGGCGCGGCGGGAATGGCGCTCTACAATCCCTATCGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026691:ENSRNOT00000038602:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF050198=Coq4=PU(13.5=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGTCTTACCTGAGGAGCC
R:
AGGGATGTGGTCTGGGTACAG
Band lengths:
179-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]