HsaINT0040188 @ hg38
Intron Retention
Gene
ENSG00000167113 | COQ4
Description
coenzyme Q4 [Source:HGNC Symbol;Acc:HGNC:19693]
Coordinates
chr9:128322536-128323147:+
Coord C1 exon
chr9:128322536-128322928
Coord A exon
chr9:128322929-128323015
Coord C2 exon
chr9:128323016-128323147
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
GCCTTTTTCTTGCCCCGCAGAAA
3' ss Score
12.41
Exon sequences
Seq C1 exon
GGGAAAACCGGCTGTGGAGAAGGAAATAGGGCCCGGCGCTGAGTGAGCGTGGTTGCGTGTCCTTTGCAGACACTTTCTGGGGCGAGGTGACATGGCGAGAGTCTTGGATCGGTGGACGTAGACGGTAGACAGTTCGCGTGCGTTTCCTTCGCCTACTTGGCCTACATGCCTTCTGCCCGTGAAGCGATGTTTCCCCTCGAAAGGCCGTAGGCTACGCCGTCAGAATCGGTTTTTCAGTGAGTTTTGACCCCTCCGACGCTCCGTCGCCTGACAGAATCGCGGCGTTCTTCGTACCCGCCCATCCTCCGCGGACGCCCGCTGCCATGGCGACTCTGCTGCGCCCTGTCCTCCGTCGGCTCTGCGGGCTCCCGGGCCTACAGCGGCCTGCGGCAG
Seq A exon
GCAAGTGGCGCCGGGTTCTGGGCGCAGGCGGGAAGGAGCCTGAGGGCGCCCGGCTCCTCTGACCTCGGCCTTTTTCTTGCCCCGCAG
Seq C2 exon
AAATGCCCCTCCGGGCTAGGAGCGACGGCGCCGGCCCGCTATACTCGCACCACCTCCCCACCTCCCCGCTGCAGAAAGGGCTGTTGGCCGCCGGCTCCGCGGCGATGGCGCTCTATAACCCCTACCGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167113:ENST00000300452:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=NA C2=0.335
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF050198=Coq4=PU(13.5=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCGCGGCGTTCTTCGTA
R:
GGGGAGGTGGTGCGAGTATAG
Band lengths:
179-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development