HsaINT0040188 @ hg19
Intron Retention
Gene
ENSG00000167113 | COQ4
Description
coenzyme Q4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:19693]
Coordinates
chr9:131084791-131085426:+
Coord C1 exon
chr9:131084791-131085207
Coord A exon
chr9:131085208-131085294
Coord C2 exon
chr9:131085295-131085426
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
GCCTTTTTCTTGCCCCGCAGAAA
3' ss Score
12.41
Exon sequences
Seq C1 exon
GAGGTTCGCATTTTATAGTCTTCGGGGAAAACCGGCTGTGGAGAAGGAAATAGGGCCCGGCGCTGAGTGAGCGTGGTTGCGTGTCCTTTGCAGACACTTTCTGGGGCGAGGTGACATGGCGAGAGTCTTGGATCGGTGGACGTAGACGGTAGACAGTTCGCGTGCGTTTCCTTCGCCTACTTGGCCTACATGCCTTCTGCCCGTGAAGCGATGTTTCCCCTCGAAAGGCCGTAGGCTACGCCGTCAGAATCGGTTTTTCAGTGAGTTTTGACCCCTCCGACGCTCCGTCGCCTGACAGAATCGCGGCGTTCTTCGTACCCGCCCATCCTCCGCGGACGCCCGCTGCCATGGCGACTCTGCTGCGCCCTGTCCTCCGTCGGCTCTGCGGGCTCCCGGGCCTACAGCGGCCTGCGGCAG
Seq A exon
GCAAGTGGCGCCGGGTTCTGGGCGCAGGCGGGAAGGAGCCTGAGGGCGCCCGGCTCCTCTGACCTCGGCCTTTTTCTTGCCCCGCAG
Seq C2 exon
AAATGCCCCTCCGGGCTAGGAGCGACGGCGCCGGCCCGCTATACTCGCACCACCTCCCCACCTCCCCGCTGCAGAAAGGGCTGTTGGCCGCCGGCTCCGCGGCGATGGCGCTCTATAACCCCTACCGCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167113-COQ4:NM_016035:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.370
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF050198=Coq4=PU(13.5=66.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCGCGGCGTTCTTCGTA
R:
GGGGAGGTGGTGCGAGTATAG
Band lengths:
179-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)