BtaINT0043703 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008944 | CRB1
Description
Bos taurus crumbs homolog 1 (Drosophila) (CRB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192482]
Coordinates
chr16:78249543-78257466:+
Coord C1 exon
chr16:78249543-78250502
Coord A exon
chr16:78250503-78256918
Coord C2 exon
chr16:78256919-78257466
Length
6416 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CCTCTGTCTTGATATTAAAGAGT
3' ss Score
3.67
Exon sequences
Seq C1 exon
GAGTCCACTGTGAAGAGGACGTGGATGAGTGCTTGTCCAGCCCTTGCCGCAATGGGGGCACTTGTGAGAACTCGCCTGAGGGTTACACTTGCCACTGCCCATTTGATCCCCATTCTGGAGTCTTCTTTGGAGGCAGGGACTGCTCTGATATTCTCCTGGGCTGTGCTGATCATCCGTGTCTAAACAACGGGACGTGTGTCCCCCACGTCCACGACGGCCAGCACGGATTCGACTGCCTGTGCCCCCCTGGCTACACCGGGTCACGGTGTGGAACCGTCACCACACTGTCCTTTTTGGGCAGTGGCTTCCTGTGGGTCTCAAGTGGCTCAGCTCTGGCCCAGGACTCAGGCTGTACCGTAGCCCTCAGGTTCCAGACCGTCCAGCCGGCGGCCCTGCTGCTCTTCCGGGGTGACCGGGACGTGTTTGTGATGCTGGAGGTGCTGGCTGGCTTTGTCCACTTGACCGTTCAAGTCAGCGATCGGCCGAAGGTGGTCCTGCTCATCCCCCACGACACCAGCGACGGAGGGTGGCATGCAGTGGAGGCGACGTTTGCAGAGGCTGTGACCCTGGCCCTGCGCGACGACTCTTGCATGGGGACATGCGTTGCTAGGGCTCCTTCTCCATTTGAAAGTGATGGGTCATCAGCGTGTGCTCTCCAGAACTCCTTTTTGGGGGGTTTGCCAGAAGGAAGAGCCCACAGTGGTGATGCTCTGCTTAACGTCTATAGGATACCATCCGCACCTTCTCTCGTAGGCTGCCTCCAAGACGTGCACCTGGACTCGAATGCCATCACCGCAGAGAACGTCTCATCTGACCAGTCTCTGAACGTCAAGGCAGGCTGCGCCCGAAAGGACTGGTGTGAGAGCCAGCCTTGTCGCAACAGAGGACGCTGCCTCAACCTGTGGCTCGGTCACCGGTGTGAGTGCTACAGGCCCTACCGCGGCCGCAGCTGTCATGGAG
Seq A exon
GTGAGGGGGCTGGGGGCTGGGTGGGCCGGGGGCTTAATGGCCAGGCTGCTGCTGGCGGTGATGACCCCAAAGGACGCTGTTGCTGGCTGCCCGCCGACGGGAAACAGAAGAGGCTGGGGGTGTGCACTAGTTCCGTCTCAGTGAATGCGTCCCACGCCAGGGTTTCAGCCACGCAGAGAAGCGAAAACTAAGCCCACAGCTCCCATCCAAGCGGGTTTCCTTCTTGGTGTTTACAAAATGCTGCTACAATCTTACCATTTGTGGTGTATCAGAAATTTATTGTATATTTTACTTGAAAGGGAAGCAGTCTTTTTGAAGAATAGGCCATGAAACTAGTCAATACCAAGTCCTAGCTCAATGGCTCGTGCGTATAGCTCAGTGGCTCGTGCGTAGTAGGAGTTTCTTTCCTAAGAAACAGTTACTTTCTTGCCCCCCTTTCCATGCAGTTCACACTTGCTCCAAAATCGTGCCTCAGTTTAGCACTTTTATAAACCACCAATTTTATTCAAAGGTGTATTTTTAAGAGTTGCATTGGAGAAAACAGGTATTCTACTTACGTGTCCAAGAAAGAAAATATTTTTAAAAAGTAACAACATGGAAACTGGGTAGATGCCATAAACTAATTGATGTAATTTCTCCAGCAGATGAGTTTGAAATGCACTTCAAAGGCCTTACTTCCGACATCGTTCCAAAGATCGCTGTTGATAGTGATCAATATATACCTGTTTCTTTTTATTATGATTCTTTTGCACTGAAAATGTCGGAAAGGTAATTGCAACAGACTGCTTTGAAGTGAGCTGTAATTCACCCCAAGATTTGAGAGTTATTTGAAAAGGGACGACATCTGGTAAATAGTCTTCTGTGCTTTATATGAAGTGAAATTGAAACCAGCCTTGGTCTATACCCTACTCCATGTATGAAGGGCTGAGAATTATTAGACACTATTCATGGGTCTCCCCCTGACCACAATATTCATTACAAATCACGGACCTGCTTGACAATGAGGTCTGGCATCTACTAGCTCTAAGTAATATTTTAAATGGAATGGCAAGTTGTTTTGAGATTTTTTTTAAAGGAGAAAGGGAGAAATTATACTGCAGCAATGTTCAGTTTTTGAAGAAAAATCTAATTGACCCAAGGCAATATTTTTCCTACATATACAAAATAACAAACAGATGCTGAGTCATTTTGACCAGCTTCCAAGTGCAGTGACCCACGAGGTTACTACTGACTGCAGTGATGCTAACTGTCCTGGTAAATAGATTCAAGAGATGCCAGTCTCGTGGGTTCTGGTTTGCTTTATTTTTTTCCAACTTGGAAAACTCACAGTCTTGAAACCCAGTTCCTGAGTTGGGTACCTGTCCCCTGTCTTCCTCCAAGTTCCTTCTCCCCTACCCTGCTGCCCCCACCCCTTCACTATTTGAAACTGGTTAATCCTCATGAAAAAGCTTCAGAAGATGTCTCCTTAGGGAGTAAATTCTGTAAAGTCTTCTCTTTCTGAAATTCTTGGTATAAGTTTAAGAAAAGTTATATTTCGGATATCACCTCTTAGTCATAAATCCAAAGCATCCTTGTGTGCTTTCTGCCGCTCAGTCGTGTCTCACTCTTTGTGACCCCATGGACTGTAGCCCGCAAGGCTCTTCTGTCCATGGGATTCTCCAGGCAAGAACACCAGAGTGGGTTGCCATGCCCTCCTCTAGGGGATCTTCCCGACCCAGGGATCAAACCCGCATCTCTTAAGTCTCCTACATTGGAAGGCAGATTCTTCACTACTAGTGCAACCTGGGAAGCCCCAAAATGCCCTGTATTTGCTGTCATCTTTGAGGAATGTCTGCTGGGGAGTTTATCCCATCACAGAAGATGCTTGCAAGCTATATGGGGCAACCTGGAACCTTTCTGTCATTGTGCACAGACGTTCAGGAGCGGGGAGATGTGCTAAAAAGTACAAGGGGAACTTCACCCAGGTCTTGATCCCAGCTCAGTGTTTCCCAAACATGGTACCCATTGCAAGGAACAGACAGACTGGAGGGAGAATTTAGCTGGCTGAATACACAGGGAAGACAGAGGGGCTTCCTGTATTGTAAAGCTGATCATTTAAAAATAATCAAGTGTCTCACAATAAGAAGAGTTCAGAGAAAATTTTCTCAAAACTTGTCTGCAAGTGTCTACGCTTAGACACTTAGAAGCATAGACATGATTCCTTTGGCATCATTTTTTAATGCTCCTTATCAGTGTTATCTTGTCATCCTGGCTGTGTCCAGGAACGGGGAGCTTCCAAGATACTGTTCAGTATAACGTGTCACTGATCTCATTCCTTCTAGAGGATGTTTCATTAACAGAGGCAATTGACATATGTTTTATCTTCAGTTATACACCTAAACTTTGAGACTCTTACCCTCTTGGAATTAGAGCTTCTTAGGCATAGGATGTCCTTCATTCCATGACTGAATTTCTTACAGCTGTGCGTGCCAAGTGTAGTGGCCCAGAATTCTGCTTATACACCGCCAGGTGTGAGAACCCTTTCATCCTCCATCTTCCCAGAAATCCCCTAAAAGTTGTTTCTTGGTCCTGAAATAATGTAGGATGACCTCCCCTTCCATTCATTGGCTGCACTGTAACTCTTGAAGCCAATGACAATCTTGCTTACATGTGTTCTCCATGAGAACTCAAATATTTGGAGACAAGTCTTGTACTGTCGAGGCCATCATGCCTATCATGCTGAACACACCCAGGTTCTTCCAATGCTTTCCTCAGGGGCTCGTTTTCAGCCCCTCCGTCGGCTGCTTGCTTGCTTGGGAATAAATGTGCTTATCTGGCTCCTAGATGAGTCGGAGAATGCAGAGTGCCATGGGACTGTGACCTCCTCATTCTGGAGAACGTTCTTCTATTCTGCAGCCTAAGACCACATTGACCTTTGGGCAGCCGCCTTCTGTGATAGGCTCACTTTGAGCTGTTCTCACCGATGGTGTTGCAGAGTTCTGCTTCTTCCACCCTAAACCAGTGAAGGGCGTTTAGACCCAAGTGGCTTTTATTTATTCTCAATACATTTCTCCTTGTTGCAGTCCATCAATCATTAAGACTTGAAGTTACTTTTCAGCCGTATTTGTCACCCCTCTCCAGGACACGTCAACAACACATACGAGAATCATTCTTCCCGTGTCCCCAGACGAGTCACGTGTGGCGTCAGGTGCTTCTAAAATCATGTACTGAATCACGTGCTCTGACTATGTGCTTGTGACTTCTGAAGAGAACAGGACTGCTGAAGAGTCAAGCTTCTGAGAGAAAGCAACCGCTCTGTGTTCTGTGCTTTTAATCTGGATCCACAAAGTGATGCCGTAGGCGTCCCAGGATGACCAGCGGGGACCACCCCTGAGCTGAGCGATTCTGTGCATTTTCCCAAACCTCGGGAACTTCAAGAGCCAGCTTTCCTTATTAAACATTTTATCTCACATGAAAGCGCTGCTGTGTGTTCAGAGATGTTAGCCTCTTCAAACGGACTGTTACATCTAACGGCGCGCTTTGAAAGCCACCTGTAGCTCGCTGGAGCGGGTGGTCTCCAAATGCAGATTCCAGCTGTAATGATCCTGTAAGAAATCGAGATGAAATTTTGAAAATGAAGCCTTTTATGCAGGAGGTCTTCAAACACAGTGGTTGCCGGAGCAAGTTTCACTGTAGTTCAGCTAAACTAAAATATGTCTCACCTTTGTTCAAGCTTTAATGGAACCATATGACATCATTTAAATGTGGTAGAATATGCCATTTTTCTGGTAGGATGGGGATGTGAAGACTTGAAGATGGCAATATCTTTAAGGTGATGCCCTTGTCTAGTACATCAGTGATTTCCAGGTTGCCAAATTCAGCAGTCAATTTTCAGTCCTCACCTGCCTTGACTGCTCAGCAACCATTACCACAGTTGAATACCCCCTCTTCCTGAAAGGCTTCCCTGGTGGCTCAGCTAGTAAAGAATCCACCTGCAATGCAGGAGACCCCCAGTTCAACTCCTGTTATAGGGAGATTGGCTGGAGAAGGGATAGGCTACCCACTCCAGTATTCTTGGGCTTCCCTGGTGGCTCAGCTGAGAAAGAATCCACCTGCAATGTGGGAGACCTGGGTTCAATCCCTGGGTTAGAAAGATCCCCTGGAGATTGGAAAGGCTACCCACTCTAGTATTCTGGCCTGGAGAATTCCTGGACTGTATAGTCCATGGGGTCGCAAAGAGTCAGACATGACTGAGTGGCTTTCACTTTCACTTTACTTTTCTTTTACTTTCCTCCTGAAAACCCTTCCTTCCCTAGGCTTGGGGGTATCACTCTCTGGGTTTTCTTTCTATCTTATTAATTTATCCAGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGATGGAGGACCCTGGGAGGCTGCAGTCCATGGGGTCACTAAGAGTCGGACATGACTGAGCGATTTCACTTTAACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCTCACGGAGTTGGACACGACTGAAGTGACTTAGCAGCAGTAGCAGCAGTATTCATTTATCGACTCCTTTACGTCCACATGTCTGATGCTTAAGGGCTCAGTTCTTGGACCTCTTCTCTCTCTAGATTCATGTTCTTGGTGATCACATCTAGTCTCATGGCTTTAAAAGCCATGTGTACACTGGAAAATCCAAAATTACTATGGCTTGCGCCAAATGTCTTCCCTGAACCTCTGTATCTAACTGCTGACTAGACACTTCCACCTGGATATCTAATAGGACATCTTAAATTTAATATGGAATCCCATTCCCTCCAACCCAAACCCATTCCTCCTGTTTTCTCCTCCATCTCTGCAAATGGAGATTCAATGCTTCTAGTTACTTAGACCAAACACCTTGGAGATGAACTTGCCCCAGAAGATCCTGTTGGTCCTACCAAAACATTTCCAGAATCTGATCACTTCTCCCCATCTCCACCATGACCACTGATCTAAGCCAGTGTCATTTCTTTCCTGTATTTCTGCAATAATATCTCTCCTTTCTTTGGGATTTTGCTCAAATAGTACCTTCTCAGAGCTCTTCCCTGACGATTCCATTTAAAATGCTGGCTCCACTCCCACCCCCAGCTCTCTCTAATCCCGTTGTCTGCTTGACTTATTTTATACCGAAGAACCTGTCACCACCTGACATACCGCATCACCTCTACCCAGCTGGAACATAAGCTTTAGGAGTACGAAAGCTTTTGTTTCTACTGTATCATCGATGCTTCTGAAGGTCCGCGTCCATTCATTTTCATGCTCCTCAAGGGTTTTCTTGTGGTGAGGCACATCCGTAGTGTCGCCATGTCCGTGCATTAGAAACCTCTCTGTCCACAGGAAACGTTGGGTGAGTTCAAAACTCAGCTTTTGGATTGAGTCCAACTTCTGTGAGCTCCACACCTTTCTTTACCCACCAAGGACGACAGGAGGAAGAGTCCTCCTCTTCCTTTGTTCAACTGCCTCATCTCCTATTATTGTCAGGGCTATCTTCCCAAGCGAGGATTTGCCAATCTAATTCTTGATTTCCGTCCTTTGCAAGGAATAATTAGGTTTAATGCCACTTGCTTGAGGATGCTCCCCATATAGCAAAGACAATGATTGCTCAAATAGCCTGCTTCCATGTCCTGGAGGAAGAGCTCTTTCCCCCCAGACTTCTCAGAGCCAAGCTGGAGCAGGGTACTGTCTGGTCTCCCTTCTTTTAGTCCCACCTCTTCAGGGCAGTGAGGAGGAGGCGTGGAGATTCATCAGTGCAGAAATCTTCTCTTCCTCCTTGTGATCAGTGGACCTCAACTATAAACTATACACTGAAATCTAATTTTCAGAATAAAGTAAACCCACAAGTTCAGAAAGTCAGGTTAAATTGTCATTCTATTGAATAAATCCGTCATGAACTTTAAAAAATATGGCTGTATTTGTGTGTGTGTGTGTGTCTGTGTGTATATTCATTATGGGTGTCCCTGGTGGCTCAGTGGCAAAGAATCCACCAGACAATGCAGGAAATATGGGTTCCATCCCTGTGTCATGAAGATCCCCTGGAGAAAGAAAAGATAACCCACTCCAGTATTCTTGCCTGCCTGAGAAATCCCATGGACAGAGGAACCTGGCGGGCTACAGTCCATGGTGTTGCAAAGGAGTTGAACACGACTGAGTGAAGAAACAACAACATATATGCATTGCAACATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAATCTTTTGCTGCTTTTTTACTTGTGAATCTTAAGATGTTTCTTCTTGGTTTTTCCTCCTCTGTCTTGATATTAAAG
Seq C2 exon
AGTATGTGGCAGGCAGATTTGGCCAAGATGACTCTCCTGGATATGCTGTTTTTCATCTCAACAAGGATTACGAAGAGGACCTCACACTCTCCATGTTTGTTCGAACACGCCGTCCGACCGGCTTGCTCCTAGCTCTAGGAAACGGCACTTACCAGTACCTCCGTGTCTGGCTAGAGCATGGCAGGCTAGCGATGCTGACTCCAGGTTCTCCCAAATTACTAGTAACATTTGTTCTCAGCGACGGAAATGTCCGCTTGGTATCTTTGAAAATCAAGCCAAATAAAATTGAACTGTATGAGTCGTCACAAAATCTAGGATTTCTTTCTGCTCCTACGTGGAAACTCCAAAGAGGAGATGTCCTCTACGTTGGTGGACTGCCTGACAGGCGAGAGACTGAGGTTAGTGGTGGATTCTTCAAAGGCTGTATCCAAGACATGAGGCTAAACAACGAGAACCTGGAATTCTTCCCAAATCCAACGAGCAGCGCAGCCCACAATGCCGTTCTTGTCAATGTGACCGAAGGCTGCCCCGGAGACAACCTGTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008944:ENSBTAT00000033880:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(3.9=0.6),PF0000822=EGF=WD(100=7.8),PF0000822=EGF=WD(100=10.9),PF0221019=Laminin_G_2=WD(100=43.3),PF0000822=EGF=WD(100=9.7)
A:
NA
C2:
PF0221019=Laminin_G_2=WD(100=64.5),PF0000822=EGF=PU(3.2=0.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development