RnoINT0041821 @ rn6
Intron Retention
Gene
ENSRNOG00000010903 | Crb1
Description
crumbs 1, cell polarity complex component [Source:RGD Symbol;Acc:1309947]
Coordinates
chr13:56319477-56325702:-
Coord C1 exon
chr13:56324746-56325702
Coord A exon
chr13:56320025-56324745
Coord C2 exon
chr13:56319477-56320024
Length
4721 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TCCCTCTTTGGACATTGCAGAGT
3' ss Score
5.46
Exon sequences
Seq C1 exon
GGAGGCACTGTGAAGAAGACATTGATGAATGTTTACCAAACCCCTGCCTAAATGGTGGTACTTGTCAGAACTTGCCTGGGAATTATACCTGTCACTGCCCCTTTGATGATACTTCTAGGACATTTTATGGAGGAGAAGACTGCTCTGAAATTCTCCTGGGTTGCACTCATCACCAGTGTCTGAACAATGGAAAATGTATCCCTCACTTCCAAAACGGCCAGCACGAATTCACCTGCCAGTGTCCTTCTGGCTACGCCGGTCCACTGTGTGAAACTGTCACCACACTTTCTTTTGAGAGCAATGGCTTCCTGTGGGTCACCAGTGGCTCCCATACAAGCATGGGGTCAGAATGTAACATATCCTTGAAGTTTCAGACTGTTCAGCCAAATGCACTTCTCCTTGTACGAGGCAACAAGGATATGTCTGTGAAGCTGGAGTTGCTGGACGGCTGTGTTCACTTATCAATCGAAGTCTGGAATCAGTCAAAGGTGCTCTTGTATATTTCCCATAACACCAGTGATGGAGAATGGCATTTGGTGGAAGTAACATTCGCAGAAACTATAACCCTTGCCCTGAATGGCAGCTCCTGCAAGGAGAAATGCACCACTAAGTCTTCTGTTTCCATTGAGAATCATCAATCAATATGTGCTTTGCAGAACTCTTTTTTGGGTGGCTTACCAATGGGGACAGCTAGCGACAGCATGTCTGTTCTTAACATCTATAATGTGCCGTCCACACCTTCCTTTGTAGGTTGTCTCCAAGATATTAGATTTGATTTGAATCACATTACTCTGGAGAGCATTTCATCTGGCTTGTCATCAAATGTCAAAGCAGGCTGCCTGAGAAAGGACTGGTGTGAAAGTCAACCCTGTCAAAACAGAGGACGCTGCATCAACTTGTGGCAGGGTTATCGGTGTGAATGTGACAGGCCCTATGCAGGCTCCAACTGCCTGAAAG
Seq A exon
GTGAGAGGAGTGGGGTGCCTGGGAGTACTATGCCTCCGGGCAGAGCCATCTCAAATCACCCAGGCTGCCACCCCCTGTTAGGAAACATAGGGACCCCTCAGGACTTTCGCTGATGTTTGCTCACTAAGGAGATAAAAGGACACAGCCATGATATGTATTAATTATGAGTGGGTTTCATAGGATAGCTAAGCTTTATTTGGGCTGAAAAGTAAAATTAATAATAATAACAATAAGCAAATAACTCCAATCAAAGTGGCGTTTCATCTAGCTAGTAAAATGCTCTTAGCACTTTGCCATTGGTTATCAGAAATGTATGGAAAACTTTATTTGTAGAAGATGTAATCTTTTAGAGAAAGGGGAGTTTGAGATGGAGAACTAGTTAGTGCCTCATATTAATACTACATCTTGTGCTTGCTGGAGTCTCGGTGAATATACACTTTCCTGATCTCTCCATATAGCTCGCACTTCCTTAAGAATCATGCTTAAGATTAGAAGGTTGACAAGCTATCAGTTCTAGTAAAAAAATGTCTCTTTGAAGGTCTTGTTTTATAAAGAGGATAGATGTCTTCCGCAGGAAAATGAAACGTATTATCAGAAGGACTTGGTAGTTGTCACGCACGGATCAATATGATTCCTCTAGCGAATGGGTTTGAAGTGTATTTCAAATCCTTTACTTCTGACATCCCTCTGAAGGCTGCTATTGATGGCGATCAATACGTACCTGCTCACTTTTATTATTATTATTATTATCATGTATTGAGAGGGCTAAGAGGGAAGGAACCCTAACAGATGGCTTTGAAGTTCAGCTGCAATTTACTCCAGCGTTTGAGAATGAGTCCAAGGAGGACAGCATCTGGTAAATAGTCTACTCTGCTTTGTATGAAATAAAATTAAAACCAGCCGTAGCCTATACCCTACTCCATGTTCAATGGCTAAGAATTATTAGAAACTATTCGCAGGTTTCCCCCTGACCACAGTATTCATTACCATCGTGGACCTGTTTGACATTGAGGCATGGCGTCTGCTGTGCCATCCAATATTTTAAGTGGCAAGGCAAGTTGTTCTGTGATTATTGTTAAAGGTGAAATTATACCGAGGCAGTGGTTCACGTTTTGAAGAGAAATCTAATTGACCCAAAGCAATATTTTTACTACATACACAAAATAACAAACAGATGCGGACTCATTTTGACTGGCTTCCAGATGCGGTGACCCTTGAGGCTAGCACTGACCTGGGGATGCTGACTGTCTTAGGAAATAGATTCGAGAGATGCCAAGCCAGCAGGTTCTGGTTTTCTTTAGATTTTCCCCCCAACTTGGAATATAATGAACTTTTAAAACAAAATTCCTGATTTGGTTACACTTTCCATGTCTCCCCAGATATTGTGATTACACCCCTATCCTCACACCGAGTGTGATTACATCCCCCAAACTTACACAAATCATGATTAAATCTTCTGTTTTCACAGGTTGAAACTGTTTAACCCGACATTTTGCATCAAATGATTATAGGGGAAGGAATTTCTTAAAACTGTTCGTTTCTGAAAATTTAGGGGTGAAATTTTAAAGGAAAGTTATATTTTTCATATCACCCTAGAATCATAAAGTTAAAATATTCTCCATTGCTGAGATCCATATAGAAATGTTTTCTTTATTTTATTCCTCACACACACACACACACACACACACACACACACACACACAGAGACATACACACACACACAGACACATACACACACACACACAGTCACACACACAGACACACACAGACACACACACACAAACACACACACATTAAGACCACAAATGGACTTTATATACATACAGAGCCATTCTATATGTATATTCAAGATGAGGCACACTAAAAATCAAGAGGGAAAGCCATAAAAATAATAATTTTTAAAGATACATTTTATTATTTTACTTCATGTGTATGTTTGTGGGTCCGAGTGTATGTTTCTGTGAGGGCAGATCCCCTGAAACAAGAGTTAAAGACAGTTTTGAACTATCTGATTTGGGTACTGGAATCAAATCTTGGTCCTCTACAAGGGCAGCTCGTACCCTAGCCATTGAGCCACCTCTCTGGTTCTCGAACAATGATTTTGGAACAATGTTTGTCATTGGTAAACACAACAGAAAAAGAAGACAGGTTGAGTAGAGGGTGGGATTATCTGAATGACACAAAAAGACAAAAAGTGTAGACATTGCCAATATCGTGAAGCTGATCTTCTCCAAAGTCATTTGTGCCCCCATAAGATTTCCACAGCACCCTGAACTGCCTGCAGTAATAACATTAGATGTCTTGCATCATGTCAGACAGATCTTCTGAGACACTGTTCTAAGGCAGTGGTCCTCAACCTTTCTAACGATATGACCCTTTAATATTGCTCCTCAAGTTGTGGTGACCCCCAACCCTAAAATTATTTTGTTGCTACAACTGTTATTTTTGCTACTTTTATGAATCATAATGTAGATATCTGTGTTTTTCAATGGTCTTAGGTGACCCCTGTGAAAGGGTTATTCATCCCAAAGGGTTATGGCCCAAGGGTTCTAAAGGAATATGTAACATATCTCTCTCTTTATTTGGAGAGAATCTAATTTTAAGAAGCAACTTATATATGTTTGTCTTCCTCTCTACACCTAGACTTTTAGAATGTTATTATATCAGAATCAGCGCTTGTTCAGTTTGACAGAGCCTCGTTCAGTAGCTGGATTTCTTAGGTAACCCTCTGCTTTTTAACCCGCTTCAGGAACAGACAATGCACTCTCCCATCTGACCCCAAATTTTGAAATGGTTATTTCTGGGTGATGATTTAGCCCGACTTCCATTTTCCCAAACAGTTATCACTGGGGATGTTCTCACTTAGGGCTTTACATCCCTTCTTGAGAATCATTAAATATTTGAAGAAAAATATCCCATGCCCAGCAACCACTCCCACCAGCCTACACACATTACTTTCCTCTAGTGTCTCTACACGACATGTCCTTGTGGGACTTCACTAGCTGCTTGCTCCTTTGTCGTGCATTTGCCTCTTATCTGGATAATATCTGGATAATATCTAATATCTAGATAATAGCTATTATCTAAGTGTGGAACCACTGACATGGAACCACACTTTCTCCTTTCTATATAACATACTCCCATTTATCCTGTAAGCACTACACTTAATTCTGTGACAGTTTACACATTGCCTTTTGTCGCTCACTGTCACTTGAGAGGCTAGAGAGTCCTCTTCTGTCATAAACTGATGACTCACATTTAATATCAGTGACTCCCGGTTGCTTTCACTAAACTTCGTCTTATGGTCCATCGCTCACTAAAATCTGTCAAATTAAATGTTGTCATCCACACATCTCTAGAACATATCCATTATCCGTATTAAGCACCAAATCTCCCATGCTCATAGCCGGGTCCTTCCTATGTGGCTACAGCGTTTCTAAAATCAAGTAACACATCACACACTCTACCTGCTTGTGATTTCTGAAGAATAGGATTACTGGAGAGTCAAGTTTCTAAGGAAAAAAAGAAACCCATCCCTGCATCCTGTCTTTTATTCTGATCCACAAAGTGATGCCGCAGGCGTCCTAGGATGACCAGCAGGGACCTGGCCCCCTGAGCTTGAGGGATTTCTGTGCCTACCCTCAAAACTCAAGGGCTTCAAGAGCCCAATTTTCTTATTAAGCATTTTATCCTACACAAAAGTGCCGCAGCGTGTGCAGAGATGTTAACCCGTTCAAAGAGGCTGTTTTATCTGACAGAACCTTTGAAAGCTACCTGGAGTTGCCTGGAGCAGGTAGTGTCCAAATGCAGATTCACAATGCAACGTTCCTAGAGGAATCAAGTCAGAGTTCTGAAAACGTAGCCTTTTATGCGGAAGGTCTTCAAACACAGATGGTTGTCTAAGCAAGACTCGCTGTGGTTCAGCTAAACTAAAATATGTCTTGCTTTCGCACGAACTTCAATTGGAGATATTACCTAACCATGATAGGGTATGATCTCCCCACCACCACCACCCCCGAATACAACTGAGATGTGAAAGCCGAAAGCAGCAATATCTTTCTGACCGTGTTGTAGTCAAGCTCAGCAATCGTTTCTGCATTGCAGATTCAATAGTCAGCGCTCGGCCCTTCCTGTACTTGACCTCAGTCCGTTAACAATTGCACACTGCACCCTCCTAGAACCTCTTTCCCCAAGAGGTTCTTACTACATGGGGTAACTTCCCCAAATTGAACTGGATATTCTTGCTATCGATCTCTGTCTTCCTACAAAGCAGTTTAACTCCATGACACGTCTGCTTTGGCAGGCCTTCCCACAGCAGAGCTAAACGGGGCAGAGAGCCCCAAGGATGCCTGGAGCGCTCGCGGCCACACCCTTCTTTCACCAAGATGAAACTTATAGGTATATGAGATTTCGTTGTCTGGAATTTAGAGAGGAGACAGGGATATTTAGTCGATCATTTCAGAAGCTTTGGGTTTTGGGTTTTTTTTTTTTCTCTCTCTTTTGTAACTGACAGAAAGTTATTATGACACAAAGTATAGTGATTTTTATGATAATCTCAGAAGCTTAGAAAAATGAGGACACTTTACTCTTCTACTGAGTAAGACTGTCTGGGACTTGAGAAAGTGTCTGATTGTGTATATGCCTGTGAAGTTCCATCTCCCGTTTCTTCTTACGTTTAAATGTCGAAACTTTCTTTCTCCTTCCCTCTTTGGACATTGCAG
Seq C2 exon
AGTATGTAGCGGGAAGATTTGGCCAGGATGACTCCACCGGATATGCTGCCTTTAAAGTTAATGATAATTTTGGACAGAACTTCAATCTCTCCATGTTTGTCCGAACACGTCAACCCCTGGGCTTCCTTCTGACGTTAGGAAACAGTACTTACCAGTATGTCTGTGTCTGGCTAGAGCATGGCAGTCTAGCACTGAAGACTCCGGGCTCTCCCAAGTTAGTAGCAAATTTTTTTCTCAGTGATGGAAATGCCCACTTAATATCTTTGAGAATCAAACCAAATGAAATTGAACTGTATCAGTCTTCACAAAACCTAGGCTTCATGTCTGTTCCTGCATGGACAATTCAAAGAGGAGATGTCATCTTCATTGGTGGTCTACCTGACAGAGAGAAGACTGAAGCTTATGGTGGCTTCCTCAAAGGCTGTATTCAAGATGTAAGATTAAACAGCCAGAATCTGGAATTCTTTCCCAATTCAACAAACAGTGCACAGCATGATCCAGTTCTTGTCAATGTGACTCAAGGCTGCCCTGGAGACAACGTCTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010903:ENSRNOT00000032122:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=PD(23.1=0.9),PF0000822=EGF=WD(100=7.5),PF0000822=EGF=WD(100=10.9),PF0221019=Laminin_G_2=WD(100=43.1),PF0000822=EGF=WD(100=9.7)
A:
NA
C2:
PF0221019=Laminin_G_2=WD(100=64.5),PF0000822=EGF=PU(3.3=0.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]