GgaINT0034835 @ galGal4
Intron Retention
Gene
ENSGALG00000002287 | CRB1
Description
crumbs family member 1, photoreceptor morphogenesis associated [Source:HGNC Symbol;Acc:HGNC:2343]
Coordinates
chr8:2502301-2506975:-
Coord C1 exon
chr8:2506022-2506975
Coord A exon
chr8:2502852-2506021
Coord C2 exon
chr8:2502301-2502851
Length
3170 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CTCCTGTTGCTAATTCCAAGAGT
3' ss Score
2.72
Exon sequences
Seq C1 exon
GTATTCACTGTGATGAAGACATCAATGAATGTCACACGAACCCTTGCCAAAATGGTGGCATCTGTGAGAACTTTCCTGGGAATTACACTTGCCATTGCCCACCTGCAGACAAAGAAGGGATTTTTTACGGCGGCTGGAACTGCACAGAAATCCTCCGTGGCTGTACTGATCAACAATGCCAAAATAATGGAATATGTATCCCACATTTAAAAAATGGCCATCATGGATTCAGCTGCATATGTTCACCTGGATATACTGGAATACACTGTGAAACTGTAACTACATTTTCTTTTCAAGGAAATGGTTTCCTTTGGTTGAAGAATCCCACAACCACTAAAGAGGAATCTTCCTATAATATAAACCTGAGGTTTCAGACTGTGCAACCAACAGCCTTTCTGTTTTACCGAGGGGAGAAAGACACATTTGTGAAGCTGGAGTTACTGAATGGCTACTTACATTTGTCCGTGCAAGTCAAAAACCAGCCACGGGCTCTTTTGCATATTTCACACAATGTCAGTGATGGAGAATGGCATTCAGTGGAGGTAACCTTGGCAAGAGCTGTTACTCTTAATTTACTTGACAGCTCTTGTGCAGAATCATGTGTCAATAAAACTTCTGCTATGATAGATAATGATCACGTGAGGCTTGCATTTCAGAGCACATTTTTGGGCAGCTTACCAGTGGGGAACATTAGCAGCAGCTCTCAGCTTAACATCAATAATATACATTCTACACCTTCATTTGTAGGCTGTCTTCAGGATATTGAAATAGACTTGAATGTTATTACTCCAGAGAATGCATCACCTGAATCCTCTTTAAACGTCGAGGCAGGATGCAGGAAGAAGGACTGGTGTGAAAACCACCCCTGCCAGAACAGGGGCCGCTGTTCCAACCTGTGGCTGAGTTACCACTGTGACTGCTACCGGCCGTACGCAGGGCCGAGCTGTGCAGCAG
Seq A exon
GTAAGAGCATGTGATGCCGTCAACGCTGTCAGGGGGTGTTGAAAACATAACCTGGCCTCGGTGATGAACCAGTGTGACCCTAGGGATCTCTGGAACTTATTGCCCACTGGTAAGAAGGCACAAGAGGTTAGCAGTAGCACATGCTCATTATTTTCTAGTTATTTTCAAAGAAGGCTGCTTTTCAGCTTGACAAAAAGTCAGGCCGAACTGGGGGATTCTACTCATCCAGTTTTTAAATCTTCTTAGCACTCTTAGCACTCCATAAACTCTGGAAAACTGCAGTTCACAGGAGGTTATGCACTCTGAGTAAAACTTAGAAAGCAACCGAATCACTTGGAGTCGAAGCCTTATTTTCAAAGCATTCTTTCAGAGTTTTATCCTCTCTAGGCTGACATAAAGAAACTCATTTAAGGCCATGAAAGGCCAGCAAAGCACTGCAAGTTAAAAAAAATAAATAAATACAGATTCCAATTTTACAAAATGAACGAGATTATCCTATTAACTTAATCTGATTAGCCCGAGGAGAAGCCAGGTCCTCAGAGGCTGTTCCTCTCAGCCGGGTCCCGCACAGCTCCAGGCAGCAGCTAACGAAGGCTGCGCTACCAGATAGCTGCTGAGGGCCAGAGGGAGACTTGCCCATGTCTTAGTGAGCAGAAGAGCACATGTCAGAACACAGCCTCTTTGGCAGCGAAGCAGGGATTCAATAGCTGGCAGTGCCTGTGGCACATTCCCTGCTACTAGTGATCGTTCTAAGCACAGGCTGAGAGAAAGCGGGAAGACACCAGGAGGTCTCCTGCTGTCCCACATCTGTGCTGGAGCAGCAGCAAATAACCCTCTGGAGCTGAATAAAGCATATCTCAGGAGCACCAACAGTGCTGTGGTCAGATGAGAGCAGACAGACCGTACTGGTGTGGGCTGGCACAGCCGCACTGCAGCCAGGACAATCCACTGCCTTACTGCAGCTGAATGGCTGGGCCCAGGGGCTCGCCAGAGGCACTGCTGCAGAAAGCCGTGGCTTGAAATGCACTTCAAAATGTTTAAAGACAGTTTCATTTTGTATGCTATACTTGATAGGTATCAATACTTTTCAATAGAGTTTTTTTTTCCCTTATTGCAAAATGACAAAGTCTGAGAGGTAATTGTAACAGACTTCTTTGAAGTCTAGCTGTAATTTATCCAAAAGTTTGGAAAGCAACTTTAGAGTATAGGACAACATCTGGTAAATATGTTGGCCTCCCTATATGAAGTGAAATTAAAACCAGTCAGGGCTAGGAGAGGCTTATGCTGGCATTATAACTGTTGAGAATGATTAGAAAGCAAGCTTTTTTTTTTTTCTCTCTCTCTCTGCTGACCACAATATTCTTTGCAATTCATGGCACCATGCCACTTTGATACATAGGTTCTAGATATATGCCATTTTTAAAAGACTGCGGCAGGTTGCTTAAAAGGCAGAGTGGGGGAGACGTGTGGCAAAGGATAACATAAGAAATGCTAGTGTCTTTTTGAAGAAAAGTTGCTGCCAAGTATTTAATTGACAAGAGGCAATATTTTCTCTACATGCACAAAATAACAAACAGATGTTGACTCATTTTGATCAACATCCAGATGTTGCGACCCAAGAGGTTAATACTGACCAAGGTGATGCTAGCCATCTCATCAAGCAGAAGATCAGACTGATTATATATATATGTATATATATCATGTGTATATATACGTATTTATAAATAGAAATACAACAAAATAATTGCAAACATGAAATACCTTTTTGAGAACTGATAGTAACTAATTCCAGCAGAAATTTTATTTTTACCTACATGAAAATACGGTTCAGTCTGTAGTACTGCCTTACCTAGAAGGTACTATCTGAAGAGGTTTCATGCCTCAAAACACACGTTTCAACAACTAATTATTTCTACACACCAGACTTTTCAACAAGCAGATTTAGAAATGAACATAATATTACTCTTAGTACTAAAATTTTTGAAATTTGATTTATGAAAATGTTTAAGAACAATGAAAGGATTTATTCCTGTTGTCAAATAATACTACTGTGCCACATAGTAATGCAGTATGATTATTAAAGGTCTGCTAGGATCTTCACATTCAGCACCCTATTTTCATGGCATTTTTTAACAGTCAATTAAAAAAAGTAATGCTGCAGGCAGCAACTTGGCCTATGAGTCTCACTCTAGGAGTTTTACTGTGCAAAAGGGGACTGACTGCTCAGCTATGTGAGCATTAAAAAAAAAAAAATGCTTGGTTTGTTCTTTCTATGAATTTGATATATTAAAAAATAGCTCTTGAAAGTGTTTAGGCAGGAAGTCTATAATACCAAGGACAAGATCATGAAACGTGAAGTGTAAAAATAGAAACACTTTGTTGTGCTTTAACGAGATGATTCATCAGAATAAAATACGCTTTGGACTACGTATTTTATATCCTTACGAGTCTGAAAATCATTACTGAAAATAAAGAGTAAGGCAGAGAGACAGATGGTTTTGGTTTAATCATCTTAATTGATAAGCACAAAAAAATAAAAAGGCTCACTTGATCCTAGCTCATTTTTCCCCCATGACACAGTAGCATTATAAGCACTCAGGAATGAGCAGAACTCATATTAGAACTTACTGAGTCTGTTGAAAAACCTGTGCAAGACAAAATAGGTGTGCTATCTGTAAGTTTTACACAAGAGGGTTTTGCTAAGCAGCTTCTGACAATGCAACATAAAAAATCAGTGAAGTTCAAGAATTATGTAAATTTCCCTTGTCATCAGAGGATCAAAGCAACTGGCTTCTTTTCAAAATGATCTTTCCGATGACCAATCCAGGAAAATGTAGAAATTTGTCCTTCTCTTACCATTTGCAAACACAGTGTCACACAGAGCATCATAAAGGGGAAAATTGTGCTCAATAATATAACATCTGGTCCTGTACTGGGGCCTAAAGCTACGGCCATGGAAACTGACAGGAGTTTTGGAATAGAAGCTATTTATGGCCAGAACAAGTCTTTATTCATCCATAAATACCAGCACATCTTACTACCATACGTAAAGTATATTATCAGAAGTAGCTATTTGATCGTTATACTGGTTCCTTTGTCATTTAGCCCTAACTATTGTATTTTTCCTCTTTCTTTCTTTTTTCTCCTTTTCTCCTGTTGCTAATTCCAAG
Seq C2 exon
AGTATATTCCAGGTCGATTTGGATCTGAGGACTCCTCAGGCTATGCTGCTTTTTCTGTTGATGCTACTGAGAATGAAAATCTGAATATATCAATGTTTGTCCGAACACGCAAATCATCTGGCTTGTTACTGGCTTTGAGAAACAGTACAAGTCTCTATGTAAGAGTCTACTTGGAAGGTGGAAAACTCGCAATGTTAGCTCCAAATTCCATAAAGTTATTAGGGAAACATCCTATAAATGATGGAAATTTCTACTTAATAACATTAAAAATAGAACCAAATATGTTGGAATTATTCCAATCCTCTCAATACTTAGGCTTTATTTCTACTCCAGTACTAACAACCCAAAGTAAGGACTTTCTTTACGTCGGAGGCCTACCAGATAACAGAGAAACTGATAGAAATGGCGGGTATTTCAAAGGCTGCATACAGGATGTACGAGTGAATAACCAGCCACTGGAATTCTTCTCCCTCACCAATTCACTGAATTCTTTTATCAATCGAACCCTGATCAATGTCACTCAAGGCTGCAGTGGTGACAACCTCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002287:ENSGALT00000003596:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=10.3),PF0000822=EGF=WD(100=11.0),PF0221019=Laminin_G_2=WD(100=42.9),PF0000822=EGF=WD(100=9.7)
A:
NA
C2:
PF0221019=Laminin_G_2=WD(100=64.1),PF0000822=EGF=PU(3.2=0.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]