MmuINT0042032 @ mm9
Intron Retention
Gene
ENSMUSG00000063681 | Crb1
Description
crumbs homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:2136343]
Coordinates
chr1:141139555-141145652:-
Coord C1 exon
chr1:141144696-141145652
Coord A exon
chr1:141140103-141144695
Coord C2 exon
chr1:141139555-141140102
Length
4593 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TCCCTCTTTGGACATTGCAGAGT
3' ss Score
5.46
Exon sequences
Seq C1 exon
GAATTCACTGTGAAGAAGACGTTGATGAATGTTTACTGCACCCTTGCCTAAATGGTGGTACTTGTGAGAACCTGCCTGGGAATTATGCCTGTCACTGTCCCTTTGATGACACTTCTAGGACATTTTATGGAGGAGAAAACTGCTCAGAAATTCTCCTGGGCTGCACTCATCACCAGTGTCTGAACAATGGAAAATGTATCCCTCATTTCCAAAATGGCCAGCATGGATTCACTTGCCAGTGTCTTTCTGGCTATGCGGGGCCCCTGTGTGAAACTGTCACCACACTTTCATTTGGGAGCAATGGCTTCCTATGGGTCACAAGTGGCTCCCATACAGGCATAGGGCCAGAATGTAACATATCCTTGAGGTTTCACACTGTTCAACCAAACGCACTTCTCCTCATCCGAGGCAACAAGGACGTGTCTATGAAGCTGGAGTTGCTGAATGGTTGTGTTCACTTATCAATTGAAGTCTGGAATCAGTTAAAGGTGCTCCTGTCTATTTCTCACAACACCAGTGATGGAGAATGGCATTTCGTGGAGGTAACAATCGCAGAAACTCTAACCCTTGCCCTAGTTGGCGGCTCCTGCAAGGAGAAGTGCACCACCAAGTCTTCTGTTCCAGTTGAGAATCATCAATCAATATGTGCTTTGCAGGACTCTTTTTTGGGTGGCTTACCAATGGGGACAGCCAACAACAGTGTGTCTGTGCTTAACATCTATAATGTGCCGTCCACACCTTCCTTTGTAGGCTGTCTCCAAGACATTAGATTTGATTTGAATCACATTACTCTGGAGAACGTTTCATCTGGCCTGTCATCAAATGTTAAAGCAGGCTGCCTGGGAAAGGACTGGTGTGAAAGTCAACCCTGTCAAAACAGAGGACGCTGCATCAACTTGTGGCAGGGTTATCAGTGTGAATGTGACAGGCCCTATACAGGCTCCAACTGCCTGAAAG
Seq A exon
GTGAGAGGAGTGGGGTGCCCCAGAGTGCTGTGCCTCTGAGCAGAGCCATCTCTAATCACCCAGGGTGCCGTCCCCTGTTAGGAAACATAAGGACCCCTCAGGACTTATGCTGGTATTTGTTCACTAATGAGATAAAATGGCATAGTCATGATATGTATTAATTATGAGTGGGTTTCATAGGATAGCTGAGCTTTTTTGGGCTGAAAAGTAAAATTAATAATAATAACAATAAGCAAATAACTCCAATTAATGTGGTGTTTTATCTAGTTAGCAAAATGCTCTTAGCAATTTGCCATTCATTGTGTATCAGAAATATATAGAAAACTTTAGTTCTTTGTACAAGATGTCATCTTTTAGAGAAAGGGGAGTTTTGGACAGAAAAACTAGTTACTGCCACGTACTAATACCACACCTTGTGCTTGCTAGAGTCTCAGTGAATAAACCCTTTGCTGATCTCTCTGTGTAACTCATACTTCCGTAAGAATCGTGGTTAAGATTAGCATGTTGACAAGCCATCAGTTCTAGTCAAGACTGTCTCCTAAAAGGCCTTGTTTTCTAAAGAGGAGAGATGTCTTCAGTCGGAAAAAGCAAGAAGACATGAACTGTATTATCAGGAAAACTTGGTAGTTGTCACGCACAGATCCGTGATTCCTCTAGTGAATCAGTTTGAAGTGGATTTCCAATCCCTCACTTTTGACATCACTCTGAAGGCTGCCATCAATAGCGATCAATACATACCTGCTCACTTTTATTATTATTATCATGTATTGAGAGGGCTGAAAGGGAACTCTAACAGACTGCTTTGAAGTTCAGCTGCAATTTACTCTAGCATTTTAGAATGAGTCCAAGAAGAACAACATATGGCAAATAGGCTACGCTGTTCCGTATGAAGGAAAATTAAAACCAGCCGTAGCCTATACTCTACTCCATGTTCAATGGCTAAGAATTATTAGAAACTATTCGCAGGTTTTCCCCTAACCACAATATTCATTACAATCATGGACCTGCTTGACAATGAGGCATGGCATCTGCTGCTCCGCGCAATATTTTAAATGGCGTGGCAAGTTGTTTTGTGATTATTTTTAAAGGTGAAATTATGCCGAGGCAATGGTTCACGTTTTGAAGAAAAATCTAATTGACCCAAAGCAATATTTTTACTACATATACAAAATAACAAACAGATGCGGACTAATTTTGACTGGCTTCCAGATGCGGTGACCCTTGAGGTTAGCACTGACCTGGGAATGCTGACTGTCCTAGGAAATAGATTCGAGAGATGCCAAGCCAGCAGGTTCTGGTTTTCTTTACATTTTTTTTTCCAACTTGGAAAATAATGAACTTTTGAAACAAAATTCCTGATTTGGTTACACTTTCCATATTCCCCCAAATAGTGTGATTACACCCCTCCACTCACACCGAGTGTAACTATATCCCCTACCCTTATACAAAGTGTGATTAAATCTTCTATTTTCACAGTTTGAAACTGTTTAGCTCAACATTTGATATCAAATGATTATAGGGCAGGAATTTCATAAAACCCTTCACTTCTGAAAATTTAGGAGGAGAATTTTAAAAGAAAGTTATATTTTTCATGTGACCCTGAGATCATAAAGTTAAAGTATTCTTTATTGCTGAGATCCATAAGGAAATATTTTCTGTATTTTATTCCTTAAACACACACACACACACTTAAGACTCCAAATGAGACTCTATATACATATAGAGCCATTCTATATGCATATTCAGGATGAGGCACACTAAAAATCAAGAGGGGAAGCCATCAAAGTAACAATTTTTTAAAGATGTATTTTATTATTCTATGTGTGTGGGTCTGAGTGTATGCTTCTGCACCAGGTGAGTGGAGATTCCCCTGGAACAGGAGTTAATGACAGTTTTGAGCTGCCTGATGTGGGTATTGGGATCAAACCTTGGTCCTCTACAAGGACAGCTCATACTTTTAACCACTGAGTCACCTCTCCAGTTCTCAAACAATGATTTTGGAACAATGCTTGCCAGTGTTAAACCCAATGAAAGAAGAAGGCATGTTGAATAAAGGGTGGAGTTATCTGAATGATACAAAATGTAGATAGACATTGCCAATATCTTGAAACTGATCTCAAGTCATTTATGCCCCCCATAAGGTTTCTGTAACAACCTGAACTGCCTGCAGTGATAACATTGTATGTCTTGCATTATGTGTTAGAAGAAGGTCTTCTGGGATATTGGTCTAAAGCAGTTGTTCTCAACCTTCCTAATGCTGTGACCCTTTAATATAGCTCCTTGTGTTTTGCTGACCTCCCAACCATACAGTTATTTTGTTGCTACTTCACAACTGTAACTTTTGCTACTTTTGTGAATTATAATATAAATGTCTGTGTTTTCCAATGGTCTTAGACAAGCCCTGTGACAGCCCTGTGTCATTCATCTCCAAAGGCTTACGGCCCACAGGTCCTAAGAGAACATGTAACGTACCTCTTTCTATGTTCGGAAAGTCTCTAATTTAAAAAAAAAAACAATTTATATATGCTTGTCTTCCTTTGTACGCCCAGACTTTTAGAATGCTATTATATTAGAGTCAGTGATAGTTAGGTTTGACAGAGCCTCATCAGCAGCTGGATTTCTTATGGAACCCTCTGCTTTGAACCCACTTCAGGAATCGAGAAGTCACTATCCCATCTGGCCCCAAATTTTGAAACAATTATTTCTGATGACGATTTAACCCAGCTTCCCTTTTCCCACACAGTTACCACTGCGGATATTCTCACTTAGGGCTTTAACATCCCCTCTTGAAAATTCCTAAATATTTGAAGAAAAATATTCCATGCATAGCATCCACTCCCAGCATCCTACACACATTCCTTACCTCTAGTATCTCTGGAAGGCACGTCCCAGTGGGACATCATTAGCTACCTTACATGCTCCTTTGCCATACATTTGCCTCTTTCTAACAGGTGGTATCTAAATGTGCTTGATGATGCACTGACATGGAACCACAACTTCCCTCTTTCTATATAATAGGCTCTCATTTATCATGTTAGCACTACATTTAATTTTTGGGAGAGTTTACACACTGTCTTTTGTCAGTCATTGTCATTGTGAAGCTAGAGAGTCCTCTTCTATTGTATACTGATAAGTCACATTTAATATCAATGCCTCCTATTAACCTCTCACTAAACTTCACCTTATAGTCCATCAGCATTAAAATCTCTCAAATTAAATTTTTTTCTCCATACATCTTTAGAACATATCCACTACCTGTATTAGTATCAAATCTTCCATGTGTAGAGTTGGGTCCTTCCTATGTGGCTTACCGTGTTTCTAAAATCAAGTAACACATCACACACTCTGACTACCTGCTTGTGATTTCTGAAGAATAGGCTTACTGGAGAGTCAAGTTTCTAAGGAAAAAAAAGAACCCCATCCCTGTATCCTGTCTTTTATTCTGATCCACAAAGTGATGCTGCAGGCATCCTAGGATGACCAGCAGGGACCTGGCCCCCTGAGCTTGAGGGATTTTTGTGTCTATCCTCAAAACTCAAGGGCTTCAAGAGCCCCATTTTCTTATTAAGCATTTTATCCCATACAAAAGTGCCGCAGCATGTGCAGAGATGTTAACCTGTTCAAAGAGGCTATTTTATCTGACAGTACCTTTGAAAGCTACCTGTAGTTGCCTGGAGCCGGTGGTGTCCAAATGCAGATTCACAATGCAGTGTTCCTATAGGAATCAAGTCAGAGTTCTGAAAATGTAGCCTTTTATGCAGAAGGTCTTCAAACACAGATGGTTGTCTAAGCAAGACTCACTGTGGTTCAGCTACACTAAAATATGTCTTACTTTCGCACAAAATTCAATTGGTGATGATAGCTAACTATGATAGGATATGGTCTCCCTCTGTGCTCTCCCCCACCCCATGACAACTGAGATGGAAAAAGCCAAAGCAGCAATATCTTCATGACAGTGTTGTCGAGCTCAGCAATAATTTCTGCATTGCAGATTCAATAGGAAGCACTCAGCCCTTCCTACACTTGACCTCCGTCAGTTAACAAACTGAACACTACACCGTCCTAAAATCTCTTTCCCCAAGAGATTCCTACTACACGGAGTGACTTCCCCAACCTGAGCTGGATAATCTTGCTATTGATCTGTCTTCCTATGAAGCAGCTCAACTTCACAACATGTCTGCTTCAGCAGGCCTTCACACTCACAGCAGAGATGAACTGGGCAGTGTGCCCCAAGGGTACACGGTGTGCTTACGGCCACACCTTTCTTTCACCAAGATCAAACTCAGAGGTGTCGTCTGGATTTTAGAGAGGAGACAGGGATGCTTAGTTGATCATTTCGGAAGCCTTGTTTTTGTTTTGTTTTTTCTCTTTTGTAACTGACAGGTGCCTATTATAATACAAAATATAGTGATTTTCATGATAATCTCAGGAGCTCAGAAAAATGAGGAAACTTCACTCTTAGAGATTAAGACTGTCTGGGGCTTGAGAAAGTGTCTGGTTGTGTATATGCCTGTGAAAGTTCCATCTCCCATTTCTTCTTACATTTGAATATAAAGACATTTTTTTTTCTCCTTCCCTCTTTGGACATTGCAG
Seq C2 exon
AGTATGTAGCGGGAAGATTTGGCCAAGATGACTCCACAGGATATGCGGCCTTTAGTGTTAATGATAATTATGGACAGAACTTCAGTCTTTCAATGTTTGTCCGAACACGTCAACCCCTGGGCTTACTTCTGGCTTTGGAAAATAGTACTTACCAGTATGTCAGTGTCTGGCTAGAGCACGGCAGCCTAGCACTGCAGACTCCAGGCTCTCCCAAGTTCATGGTAAACTTTTTTCTCAGTGATGGAAATGTTCACTTAATATCTTTGAGAATCAAACCAAATGAAATTGAACTGTATCAGTCTTCACAAAACCTAGGATTCATTTCTGTTCCTACATGGACAATTCGAAGAGGAGACGTCATCTTCATTGGTGGCTTACCTGACAGAGAGAAGACTGAAGTTTATGGTGGCTTCTTCAAAGGCTGTGTTCAAGATGTCAGATTAAACAGCCAGACTCTGGAATTCTTTCCCAATTCAACAAACAATGCATACGATGACCCAATTCTTGTCAATGTGACTCAAGGCTGTCCCGGAGACAACACATGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063681-Crb1:NM_133239:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(18.8=1.9),PF0000822=EGF=WD(100=7.8),PF0000822=EGF=WD(100=10.9),PF0221019=Laminin_G_2=WD(100=43.1),PF0000822=EGF=WD(100=9.7)
A:
NA
C2:
PF0221019=Laminin_G_2=WD(100=64.5),PF0000822=EGF=PU(3.3=0.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: