BtaINT0043789 @ bosTau6
Intron Retention
Gene
ENSBTAG00000026403 | CREBBP
Description
Bos taurus CREB binding protein (CREBBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001164022]
Coordinates
chr25:3086387-3086877:-
Coord C1 exon
chr25:3086706-3086877
Coord A exon
chr25:3086432-3086705
Coord C2 exon
chr25:3086387-3086431
Length
274 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
TTTTTTTTCTGCCATTGTAGATG
3' ss Score
9.42
Exon sequences
Seq C1 exon
GATGAATACTATCACTTACTAGCAGAGAAAATCTACAAGATTCAAAAAGAGCTAGAAGAAAAGCGGAGGTCGCGTTTACACAAACAAGGCATCTTGGGTAACCAGCCAGCCTTATCAGCCCCCGGGACGCAGCCCCCTGGAATACCCCAGGCGCAGCCTGTGAGACCTCCAA
Seq A exon
GTAAGGACTGCATGTCCCGCCCCTGGTCTGTTCCCTCGTGTGTCTTTCTGCATTTGGTGTGTATTTCTCAGCACACAGAATTACATTCCCAGGGAACCTGTTGCTCTGAAAGCACGTGGTCGTGGCTGTGTTCTGCAGTGGCCTGTGTTTAGATGCTGAGTCTCACAGAAGGCCCTGTAAAGGGTGTGCTGGCATCAGTGCACAGCACTTTTGGATCTGCTCTTCTCTTTACAGGATTGTTTTAAGTAACTCCTTTTTTTTTCTGCCATTGTAG
Seq C2 exon
ATGGGCCCATGCCTCTTACAGTGAATCGTATGCAGGTTTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026403:ENSBTAT00000005092:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.741 A=NA C2=0.938
Domain overlap (PFAM):
C1:
PF0217211=KIX=PD(23.5=32.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTTACTAGCAGAGAAAATCTACA
R:
TGAGAAACCTGCATACGATTCACT
Band lengths:
204-478
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]