HsaINT0041342 @ hg19
Intron Retention
Gene
ENSG00000005339 | CREBBP
Description
CREB binding protein [Source:HGNC Symbol;Acc:2348]
Coordinates
chr16:3827614-3828183:-
Coord C1 exon
chr16:3828012-3828183
Coord A exon
chr16:3827659-3828011
Coord C2 exon
chr16:3827614-3827658
Length
353 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
TTTTTGTTTTGCCACCATAGATG
3' ss Score
7.81
Exon sequences
Seq C1 exon
GATGAATATTATCACTTATTAGCAGAGAAAATCTACAAGATACAAAAAGAACTAGAAGAAAAACGGAGGTCGCGTTTACATAAACAAGGCATCTTGGGGAACCAGCCAGCCTTACCAGCCCCGGGGGCTCAGCCCCCTGTGATTCCACAGGCACAACCTGTGAGACCTCCAA
Seq A exon
GTAAGGATTTTATTTCCTACTGCCATCCCTTAGCCTGTTTCCTTGGTTTTCCTTCGTGTTTGGGGTGTATTTCTAAGAACAGAGAATTAGAATATCTGATGCATGCCCTGCAGAAGCTGTTGATGTGGCAGTGGCCCTGACCACCTGCCTCAGGCTGTGTTGGGACACTGAGTTTCTCTCTTGGGAAGGCCCTTTACAGGGTGCGCTGGCATTGGAACACACGTGCTTTTGGACCTATTGGCTGTTTTCCCTTTTAAGTTTGAAGTCCTAATAAGAAATTTCCTATTCCTGAATCAAGGATTATATTAAATAACTAGGGTGGTTTTGTTTTTGTTTTTGTTTTGCCACCATAG
Seq C2 exon
ATGGACCCCTGTCCCTGCCAGTGAATCGCATGCAAGTTTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005339-CREBBP:NM_004380:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.741 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0217211=KIX=PD(23.5=32.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)