MmuINT0042132 @ mm10
Intron Retention
Gene
ENSMUSG00000022521 | Crebbp
Description
CREB binding protein [Source:MGI Symbol;Acc:MGI:1098280]
Coordinates
chr16:4124170-4124807:-
Coord C1 exon
chr16:4124636-4124807
Coord A exon
chr16:4124215-4124635
Coord C2 exon
chr16:4124170-4124214
Length
421 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
TTACATTTTCCTCCTTATAGATG
3' ss Score
10.4
Exon sequences
Seq C1 exon
GATGAATACTATCATTTATTAGCAGAGAAAATCTATAAAATACAAAAAGAACTAGAAGAAAAGCGGAGGTCACGTTTACATAAGCAAGGCATCCTGGGTAACCAGCCAGCTTTACCAGCTTCTGGGGCTCAGCCCCCTGTGATTCCACCAGCCCAGTCTGTAAGACCTCCAA
Seq A exon
GTAAGAACTGCATTTCTCTCTTCCAGTCCTTAGCTTGTTTGCTTAGTGCTCTTTTAGTCTTTGGAGTATATTTTTAAGACTACAGAGTTCTGTTCTCCAAAATCTGCACTTTGAAAGCTCTTTGTATGATCTTGCCTTATGGGAAGAATCTTTTATTTTTGTTTCTTTTTTGGTGTCTCCCAAGTTTTTCAAGACAGGCTTATTTCTCTGTGCACCCCTGGCTAATCTGGAGCTCACTCTGTAGACCAGGCTAGCTTCAAATTCAGAGATCCTCTGCCGCTGCCGCCGCCCACCTTCCCCTCACCACTGCCCAGCAGAGGGGAGATATCTTAAAAGGGTGTGCTGGCAAGTGTCTTTTAGATTCAATGTGTTTGTGTGTGTGTATGTGTATTTATTTTTAATTACATTTTCCTCCTTATAG
Seq C2 exon
ATGGGCCCCTGCCTTTGCCAGTGAATCGCATGCAGGTTTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022521:ENSMUST00000023165:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.739 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0217211=KIX=PD(23.5=32.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types