GgaINT0013489 @ galGal4
Intron Retention
Gene
ENSGALG00000007762 | CREBBP
Description
CREB binding protein [Source:HGNC Symbol;Acc:HGNC:2348]
Coordinates
chr14:12528379-12528627:-
Coord C1 exon
chr14:12528606-12528627
Coord A exon
chr14:12528433-12528605
Coord C2 exon
chr14:12528379-12528432
Length
173 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
TTTATCTGTTTTTGTTGCAGATG
3' ss Score
12.62
Exon sequences
Seq C1 exon
GCACAGCCTGTGAGGCCTCCCA
Seq A exon
GTAAGTGCTTCTGCATCGGGGTAGGCACCAGGGAAAGCCAAGTGGGACAACAGGGTTTTTGGTTCTTACACTTCGGCTGTAGCATGCAGGGTTTGTGCCCTTGTGCTTTTTAGACTAGCCTTGTGTTCAGACACCGAGTCTTTTCTCTGACCATTTATCTGTTTTTGTTGCAG
Seq C2 exon
ATGGGCCTATGTCCATGACAACTGTGCCTATAAGTCGTATGCAGGTTTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007762:ENSGALT00000039566:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]