GgaINT0013489 @ galGal3
Intron Retention
Gene
ENSGALG00000007762 | CREBBP
Description
NA
Coordinates
chr14:13231194-13231613:-
Coord C1 exon
chr14:13231421-13231613
Coord A exon
chr14:13231248-13231420
Coord C2 exon
chr14:13231194-13231247
Length
173 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
TTTATCTGTTTTTGTTGCAGATG
3' ss Score
12.62
Exon sequences
Seq C1 exon
GATGAATACTATCACTTATTAGCAGAAAAAATCTATAAGATACAAAAGGAGCTAGAAGAGAAGCGGAGGTCTCGTCTGCATAAACAAGGGATCTTGGGAACACAGCCAGCCTTACAGACGCCGGGACCTCAGCCCCCTGGCATCCCACAGGTGGCTGCTGCCATGGGCCAGGCACAGCCTGTGAGGCCTCCCA
Seq A exon
GTAAGTGCTTCTGCATCGGGGTAGGCACCAGGGAAAGCCAAGTGGGACAACAGGGTTTTTGGTTCTTACACTTCGGCTGTAGCATGCAGGGTTTGTGCCCTTGTGCTTTTTAGACTAGCCTTGTGTTCAGACACCGAGTCTTTTCTCTGACCATTTATCTGTTTTTGTTGCAG
Seq C2 exon
ATGGGCCTATGTCCATGACAACTGTGCCTATAAGTCGTATGCAGGTTTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007762:ENSGALT00000012587:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.763 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0217211=KIX=PD(23.5=29.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATACAAAAGGAGCTAGAAGAGAA
R:
CTTGAGAAACCTGCATACGACT
Band lengths:
210-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]