DreINT0051872 @ danRer10
Intron Retention
Gene
ENSDARG00000104609 | crebbpa
Description
CREB binding protein a [Source:ZFIN;Acc:ZDB-GENE-050208-439]
Coordinates
chr22:26905925-26906259:+
Coord C1 exon
chr22:26905925-26905992
Coord A exon
chr22:26905993-26906206
Coord C2 exon
chr22:26906207-26906259
Length
214 bp
Sequences
Splice sites
5' ss Seq
AAGGTCACG
5' ss Score
2.61
3' ss Seq
ATCTAATGCTTCTTTTTCAGATG
3' ss Score
9.46
Exon sequences
Seq C1 exon
GACGAGTACTATCACTTTCTGGCAGAGAAGATCTATAAGATCCAGAAAGAGCTGGAAGAGAAGAGAAG
Seq A exon
GTCACGGTTGCAGAAGCAGATCATCAACCAGACGTCTATGACTGCAACAGGACAGCAGCCATCAGCCCTCAACCAGCCTAATGTCATGGGACCGCGGCCACAGAGTGAGTCTCTTAAAAACACACACACACACACACACACACACACACACACACACACCAGTGCACACAAGTTGCTGATTTGAATCTCATTTCATCTAATGCTTCTTTTTCAG
Seq C2 exon
ATGGACCCGTGCCTATGCCCAATGTGCCAAATCAGATCCTGAATCGCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104609:ENSDART00000158756:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.323 A=NA C2=0.924
Domain overlap (PFAM):
C1:
PF0217211=KIX=PD(23.5=82.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]