BtaINT0043797 @ bosTau6
Intron Retention
Gene
ENSBTAG00000026403 | CREBBP
Description
Bos taurus CREB binding protein (CREBBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001164022]
Coordinates
chr25:3072757-3073446:-
Coord C1 exon
chr25:3073207-3073446
Coord A exon
chr25:3072846-3073206
Coord C2 exon
chr25:3072757-3072845
Length
361 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
TTTTTCCTTTGTTTTTGCAGTAT
3' ss Score
10.12
Exon sequences
Seq C1 exon
GATTACTTTGACATTGTGAAGAATCCCATGGACCTTTCCACCATCAAGCGTAAGCTGGATACAGGGCAGTACCAGGAGCCCTGGCAGTATGTAGACGACGTCTGGCTCATGTTCAACAACGCCTGGCTTTACAATCGGAAGACATCCCGGGTCTACAAGTTCTGCAGCAAACTTGCAGAGGTCTTTGAGCAGGAGATTGACCCCGTCATGCAGTCCCTTGGGTATTGCTGTGGACGCAAG
Seq A exon
GTACAGTTGGAACTTTTTTTGAATTCAGCCAAAGAGGGTGTTATGAGGATATGATGGACTCTGTACTTTGGCCACACCTGTATATTGAGAAGGACCCAAGTGGAGTCATCTGAAGCTAGAAGTTCTTATGGGTCAAGCATTCCTGGCTGCCCTGGTGTCCATTCATCTATCTGTAATAAATGTCCCTTAGACACTAATTTTGTCCCATTTTATCCAAAAATATCTTTAACAAGAATCATTAAAAGACTACTCAGTGTACTAACAGCTAATTTACTAGCTAAATCTAGTTCTCCATATCAGACACAGCATTACATGACAGTAAATGCATTTATTTTTAATACTTTTTCCTTTGTTTTTGCAG
Seq C2 exon
TATGAGTTTTCCCCACAGACTCTGTGCTGCTATGGGAAGCAGCTGTGTACAATTCCTCGAGATGCTGCCTACTACAGCTATCAGAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026403:ENSBTAT00000005092:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(64.4=70.0),PF060018=DUF902=PU(28.6=15.0)
A:
NA
C2:
PF060018=DUF902=PD(66.7=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTTTGACATTGTGAAGAATCCCA
R:
CTATTCTGATAGCTGTAGTAGGCA
Band lengths:
326-687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]