GgaINT0013497 @ galGal4
Intron Retention
Gene
ENSGALG00000007762 | CREBBP
Description
CREB binding protein [Source:HGNC Symbol;Acc:HGNC:2348]
Coordinates
chr14:12518415-12519228:-
Coord C1 exon
chr14:12518989-12519228
Coord A exon
chr14:12518504-12518988
Coord C2 exon
chr14:12518415-12518503
Length
485 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TCAACTTTTTTTTTTTGCAGTAT
3' ss Score
8.58
Exon sequences
Seq C1 exon
GACTACTTTGACATTGTGAAGAATCCTATGGACCTCTCAACCATTAAACGTAAACTAGACACGGGGCAGTACCAGGAGCCCTGGCAGTACGTGGACGACGTGTGGCTGATGTTCAACAACGCCTGGCTTTACAATCGCAAGACTTCCAGGGTCTATAAGTTTTGCACTAAACTGGCAGAGGTGTTTGAACAAGAAATTGATCCCGTTATGCAATCCCTTGGCTACTGCTGTGGGCGCAAG
Seq A exon
GTATGTCTGCCAGGGACAGTCATGTTTCTCCAAAGAGCTTTCCTTGATTGAGCTGATAAAACGTGTGCTTTGTGTAGTCCCTTAGCTTTTCTAATTGAAATAAGGAAATGGGAGGGCTTGTAGGAGTTTGGCTTTTCGTCACCACACTAAGAGCTGAAAATAAAAAACTGGGTAGTATCCTTCTTGCTGCTATTCTGTTATTGTCTTTTTCTCCCTCAGAGAGAGAGTACCTTCTCTGATCAAAGCACTACTAAAATTCTTTGCTTCCAATGTCCATTGCAGTCAAGTGGGTGCTTAGAGAGGTCAGCTCTTCATCTCATAAAGCTAATTACTATAATTCCATTAAGAGAGATTTGTTAGTATATTTACAATAGCTTGAGAAAGTGTAATAACAACGTATTATGATATCCCCAAGTTAGCCTGATTAATTGATTAATACAAGATTACATCTTAACATTTCCGTTCTCAACTTTTTTTTTTTGCAG
Seq C2 exon
TATGAGTTTTCTCCACAGACCTTGTGCTGCTATGGCAAGCAGCTGTGTACTATCCCTCGTGATGCTGCCTATTACAGCTACCAGAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007762:ENSGALT00000039566:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(64.4=70.0),PF060018=DUF902=PU(28.6=15.0)
A:
NA
C2:
PF060018=DUF902=PD(66.7=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTACTTTGACATTGTGAAGAATCC
R:
TTCTGGTAGCTGTAATAGGCAG
Band lengths:
326-811
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]