RnoINT0041928 @ rn6
Intron Retention
Gene
ENSRNOG00000005330 | Crebbp
Description
CREB binding protein [Source:RGD Symbol;Acc:2401]
Coordinates
chr10:11696374-11697242:+
Coord C1 exon
chr10:11696374-11696613
Coord A exon
chr10:11696614-11697153
Coord C2 exon
chr10:11697154-11697242
Length
540 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAG
5' ss Score
7.98
3' ss Seq
ATTTTCTTCTTGTTTTGCAGTAT
3' ss Score
9.67
Exon sequences
Seq C1 exon
GATTATTTTGATATTGTGAAGAATCCTATGGACCTTTCTACCATCAAGCGAAAGCTGGACACAGGGCAATATCAAGAACCCTGGCAGTATGTGGACGATGTCTGGCTTATGTTCAACAATGCGTGGCTGTATAATCGTAAGACGTCCCGGGTATATAAATTTTGCAGTAAACTTGCAGAGGTCTTTGAACAAGAAATTGACCCTGTCATGCAGTCTCTTGGATATTGCTGTGGCCGAAAG
Seq A exon
GTATAGTATTTCTGGAAATCCACCTTTTCTGTCTAATGCAGCCGAGTTAGTGTTGGCAGCTCTAGGGTACACTGCTGTCTTTGGATTTTTTCCAGTGTTGTGTTTTGCTTTGCTTTGCTTGTTTTAGTGTTTTGAGACAGGTTTTCTCTATGTTGTCCCTCGCTGTTCTGAAGCTGGCCTTGAACTCACAGAGATCCACCTGCCTTTGCCTCCCAAGTGCTGGGACTAAGGGTGTGCGCCACCACTGCCTGGCTAGTATGGTCTTTGTGACAGTTGACTTCCTGACATGATGTCATATGAAAGGTACTCACTAGTTGGGCTGACTGCCCTATGCCCATTGCAGCTGTTGATAGTACCTGAAACCAGAGCTGTGCCAATTCTGTCACATTAAGTCCGAAATGTCCTGAAATAGCGATGAACATTGTTAGGATTTTACCTGGTGTTCTAGTTAGTGACCAGTGGCTCTGCCTCCATAATATGCTAGAATACTTGAGGATGGTAAGTGGAATATGTGTTTAGTATTTTCTTCTTGTTTTGCAG
Seq C2 exon
TATGAGTTCTCCCCACAGACTTTGTGCTGCTATGGAAAGCAGCTGTGTACAATTCCTCGTGATGCAGCCTACTACAGCTATCAGAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005330:ENSRNOT00000007079:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=PD(64.4=70.0),PF060018=DUF902=PU(28.6=15.0)
A:
NA
C2:
PF060018=DUF902=PD(66.7=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATATTGTGAAGAATCCTATGGACC
R:
TTCTGATAGCTGTAGTAGGCTGCA
Band lengths:
318-858
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]