BtaINT0043802 @ bosTau6
Intron Retention
Gene
ENSBTAG00000026403 | CREBBP
Description
Bos taurus CREB binding protein (CREBBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001164022]
Coordinates
chr25:3062888-3063356:-
Coord C1 exon
chr25:3063279-3063356
Coord A exon
chr25:3062956-3063278
Coord C2 exon
chr25:3062888-3062955
Length
323 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CACCCATTATTTTTTTGCAGTTT
3' ss Score
8.02
Exon sequences
Seq C1 exon
TTTTGTTGACTGCAAGGAGTGTGGCCGGAAGATGCATCAGATTTGTGTTCTCCACTACGACATCATCTGGCCCTCAGG
Seq A exon
GTGAGTAACTTCCTGGTGATTTCCTGAGACTCCAGGAAAGGGAGAGCAGTCTGCACAGAGTGGAGGGGAGGGCACTGGCGGCTGCTGTGCCTCTCGTTGTCGCCAGCAAGGATCCGGCAATTAGAGGGATGGCAGTCGGTTCTAAATTTAAGTCTCAAGTGTTTGCCCGCTTTGGGAATTGTAGAATCAAAGCAGTCTGCCTCTTCACTTTTGTATAATGATGTGATGTAAATTGCCAGCAAAGTATTTTAATGCTGCATTTCACTAGTTTGGCAACATATACTGTTTTATATAATCTGATCACACCCATTATTTTTTTGCAG
Seq C2 exon
TTTTGTATGTGACAACTGCTTGAAGAAAACGGGCAGAACTCGAAAAGAAAACAAATTCAGTGCTAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026403:ENSBTAT00000005092:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.208
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]