GgaINT0013501 @ galGal3
Intron Retention
Gene
ENSGALG00000007762 | CREBBP
Description
NA
Coordinates
chr14:13212645-13213261:-
Coord C1 exon
chr14:13213184-13213261
Coord A exon
chr14:13212713-13213183
Coord C2 exon
chr14:13212645-13212712
Length
471 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TTCTGTTTTTTTCTCTTCAGGTT
3' ss Score
12.52
Exon sequences
Seq C1 exon
GTTTGTTGACTGCAAGGAGTGTGGTCGGAAGATGCACCAGATTTGTGTATTACATTATGATATTATTTGGCCTTCAGG
Seq A exon
GTAAGATGTTTTGTTAGCTTTCTAAGCCTTGTATGATAAGACTGATGTTGTTTTCATAATTAAGATTTTCTGCATTTGCTTTTTAATGCGCATCACTGTCTTTTAAGAGCTGAGTACAAATGGACAAAGCATTTCTAAATGTTTGCATCTCTGGTCTCATTTCAGTAGGTACAGATGAAAAAGTAAATGAAACAAACTTGTTACATGCTCAGATTTCTATGTTTTCTAAGTGATGAACAATGGGAGCTGATTGGCAATAGATTTGTGTCCTAAAAAACACAAATTCAGGTGTAGCTGTTTGACAGACTTAAACCAACTCAGTAGGGCTTAAAGTCCCTCAAATGGAAAGGTCAGATCCAGAGAAAAACGCATTGTATGTTGATGGTTAAAATGATGGGTTCAGGCTTGGAGCTGGATGCAGCCAGGGTTGGATTTGTCAAGTTTTTGGCACTTCTGTTTTTTTCTCTTCAG
Seq C2 exon
GTTTGTCTGTGATAATTGTCTGAAGAAAACTGGTAGAACACGGAAGGAAAACAAGTTCAGTGCTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007762:ENSGALT00000012587:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.208
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]