HsaINT0041355 @ hg38
Intron Retention
Gene
ENSG00000005339 | CREBBP
Description
CREB binding protein [Source:HGNC Symbol;Acc:HGNC:2348]
Coordinates
chr16:3744894-3745354:-
Coord C1 exon
chr16:3745277-3745354
Coord A exon
chr16:3744962-3745276
Coord C2 exon
chr16:3744894-3744961
Length
315 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
ATACCACTATTATTTTGCAGTTT
3' ss Score
7.25
Exon sequences
Seq C1 exon
TTTCGTTGATTGCAAGGAGTGTGGCCGGAAGATGCATCAGATTTGCGTTCTGCACTATGACATCATTTGGCCTTCAGG
Seq A exon
GTGAGTTGTTTCCCCTGGCCTGGAGGGCAGTTCTGCACAGAGCCAGTGGCGGGGCAGTTGCAGTGGCTACTGCATCTCATTCATTGTTGTCAGCAAGAATTCAGCGATTAAGAGAGATGGCAGTTGGTTCTAAATTTAAGTTCTAAGCGTTTGTCCGCTTTAGGAATTGTGGAATCAAAGCAGTCTGCCTCTTCACTCTTTAATTTTATAATAATGTGATTTAAACTGCCAACAAACTATCTGAATGCTGCATTTTGTTGGTTTGACAATTTACATCATTATATACAGTCTCATCATACCACTATTATTTTGCAG
Seq C2 exon
TTTTGTGTGCGACAACTGCTTGAAGAAAACTGGCAGACCTCGAAAAGAAAACAAATTCAGTGCTAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005339:ENST00000262367:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.252
Domain overlap (PFAM):
C1:
PF0062824=PHD=FE(55.3=100)
A:
NA
C2:
PF0062824=PHD=PD(19.1=39.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development