RnoINT0041933 @ rn6
Intron Retention
Gene
ENSRNOG00000005330 | Crebbp
Description
CREB binding protein [Source:RGD Symbol;Acc:2401]
Coordinates
chr10:11707861-11708319:+
Coord C1 exon
chr10:11707861-11707938
Coord A exon
chr10:11707939-11708251
Coord C2 exon
chr10:11708252-11708319
Length
313 bp
Sequences
Splice sites
5' ss Seq
AGGGTGCGT
5' ss Score
7.22
3' ss Seq
ACCCATTATTTGTTGTGCAGTTT
3' ss Score
5.54
Exon sequences
Seq C1 exon
CTTTGTTGACTGCAAAGAGTGTGGCCGGAAGATGCATCAGATTTGCGTTCTACACTATGACATCATTTGGCCTTCAGG
Seq A exon
GTGCGTGATTTGTTGAGATCTCTGGGAAGGGGGAACAGCTGTGCATAAGTCATGGGGAAGGAGTCTGTACTCCCAAATCTTGTTCGTTCTCAGCAAGAATTCAGCAATTAAGGGAGGTGGCAGTTGGTTCTAAATTTAAGTCTTGTGTTTGCCTGCTTTACAAATTGTAAACTCCAAACCAGTCTGTCTCCTCACTCTTTTTCACAATGATCTGATTTCAACTGCCAACAAAGTATTTCAGTGCTGCATTTCACTGGTTTGGCAACATACACTGTTGAGCATAATCTGACCACACCCATTATTTGTTGTGCAG
Seq C2 exon
TTTTGTGTGTGACAACTGCTTGAAGAAAACTGGCAGACCTCGGAAAGAAAACAAATTCAGTGCTAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005330:ENSRNOT00000007079:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]