DreINT0051884 @ danRer10
Intron Retention
Gene
ENSDARG00000104609 | crebbpa
Description
CREB binding protein a [Source:ZFIN;Acc:ZDB-GENE-050208-439]
Coordinates
chr22:26919286-26919547:+
Coord C1 exon
chr22:26919286-26919363
Coord A exon
chr22:26919364-26919479
Coord C2 exon
chr22:26919480-26919547
Length
116 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CTCTCTCTCTCCCTCTGCAGTTT
3' ss Score
12.31
Exon sequences
Seq C1 exon
GTTTGTTGAATGTAAAGATTGCGGGCGGAAGATGCATCAGATTTGTGTCCTGCATTATGAAGTCATTTGGCCTTCAGG
Seq A exon
GTGAGTTTGAAAACACCTCAGAGCAAACCGTGTTGCTTTGATATCGATTCTAATGCCATGCAGGAAGCCAGGACTAATGAGCATCTCTCTCTCTCTCTCTCTCTCTCCCTCTGCAG
Seq C2 exon
TTTCATCTGCGATAACTGTTTGAAAAAGAGTGCAAAGTCAAGAAAGGAAAACAAGTTTACGGCAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104609:ENSDART00000158756:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.042
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGTTGAATGTAAAGATTGCGGG
R:
TCTTTGCCGTAAACTTGTTTTCCT
Band lengths:
146-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]