BtaINT0046181 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037795 | CYP2C87
Description
Bos taurus cytochrome P450, family 2, subfamily C, polypeptide 87 (CYP2C87), mRNA. [Source:RefSeq mRNA;Acc:NM_001076427]
Coordinates
chr26:16030292-16031793:+
Coord C1 exon
chr26:16030292-16030484
Coord A exon
chr26:16030485-16031630
Coord C2 exon
chr26:16031631-16031793
Length
1146 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
ACATGCATTTCCATTCCCAGCTC
3' ss Score
7.35
Exon sequences
Seq C1 exon
GTCTGAGTAAGAAGAGAAGGCGTCAATGGATCTGGCTGTGGTCCTGGTGCTCTGTCTCTCCTGTCTGCTTCTCCTCTCACTCTGGAAACAGAGCTCTGGGAAAGGGAAGCTCCCGCCAGGCCCCACTCCTCTCCCAATTCTTGGAAATATCTTTCAGTTAGATGTTAAGAATATCAGCAAATCTTTAACCAGT
Seq A exon
GTAAGTAGATTTTATGTTTCTCCAGGGTCTTGCAAATGGTAAGTAAGTTAAGCCTAATTTTGATGCTAATACATAAGTTTCTATGGGCACACTGTCAAAATATGTAAATGTGAAGCAAATTACTTCCTGTAAATTTTGACACTTTTCTTGCCTAAATAGAGGAAAAAGGAATGTGTTTTTCGAGTAGAGAAACACTTAGCTCTTTGTATGGTAAAATGAAAATAATAAAGTATTAAAAGCTGGGAGTGTTGCCTCCCTCCTTTGTTTCACAGCCATTTGCTATGATTTGGGGCTGATTTTTGGCATTTTGTGATTCAAGATTTTCTTCCAGAAGTCATATACTACGTAAGCCGCTTGTTCTGTTCAGAGTCAGGAAAATATAACTTTTTTGCAAAAGGAGATTGTGCCTGATGTAGAGGAATTGACTTGGGATCAAGACAAGCATGAGTGATTGAAAGAAAGAAGTCATCACTCAGGATTCTGCAGGAAGCTGCCGTCTGTACCCTGTGAATGCTGCAGGGTGTCAGATGCTGTTCTTCCATGAGATGCAGTCTCTCTAAGCACTGCCTCTACGATGTTTCCTCTCTTTCTGTATTAGTCATACCAGTGGATCTCAAACGAGGCTGGGAATTTATTTTTTGAAATGATAAATTTCTAGTATTCATCATAGGGCTATACAATCAGAATTCTAAGCGCTGCTGTGTGAGTGATTCTGAAACAGTCAGCTGGCTGATGGTTTAAAGCTGGGCCTTGAGGACTGCTACATTCCTCTCATGGATCAGAGGGTGATTATGAAGATCTTCAAACTGGAATTCTTTATATATTAGCCCTGGGATGCTGGAAATACACCAGAATTCCCCTACTTTAGTTTCCTTATTTATAGTGGGGCAAATAAACCTGAAAGTGCTGATTTGAGGATTAATTATAATCCGTGTACCAGTTATTTGGACCATTATCCAGGATCTCAGGTCATCCATAAGTGGAAACTGTAACAATCACCATCATACTTATGAATTGAATTGAGAAATATTTTAAGCTATGTGGCAGAATAAAAACATAATAGTAGGATGATAACACAGTCTGTATCAGGCACAATATATATCAAATATTGACTTCTTTTGCTATTACATGCATTTCCATTCCCAG
Seq C2 exon
CTCTCAAAAGTCTACGGCCCTGTGTTCACTGTGTATTTTGGAATGAAGCCCACAGTAGTTTTGCATGGATATGAAGCAGTGAAGGAAGCTCTGATTGATTTGGGAGAGGAGTTTTCTAGAAGAGGCAGTTTCCCAGTGATTGAAAGAAATGTTAAGGGACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037795:ENSBTAT00000027159:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(5.7=46.4)
A:
NA
C2:
PF0006717=p450=FE(11.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGCGTCAATGGATCTGG
R:
CGTGTCCCTTAACATTTCTTTCA
Band lengths:
342-1488
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]