BtaINT0046287 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011976 | CYP4B1
Description
Bos taurus cytochrome P450, family 4, subfamily B, polypeptide 1 (CYP4B1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076202]
Coordinates
chr3:99939000-99941114:-
Coord C1 exon
chr3:99940924-99941114
Coord A exon
chr3:99939134-99940923
Coord C2 exon
chr3:99939000-99939133
Length
1790 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CCTGCTTGTGTTGCTGGCAGGGA
3' ss Score
7.75
Exon sequences
Seq C1 exon
GATGAAGAAGGCATCAAGCTATCAGATGAAGACCTCCGGGCCGAGGTGGACACATTCATGTTCGAAGGCCATGACACCACCACCAGCGCCATCTCATGGGTTCTCTACTGCATGTCCCTGTACCCCGAGCACCAGCGTCGTTGTCGGGAAGAGATTCAGGAGATTCTTGGGGACCGGGACACTTTGAAGTG
Seq A exon
GTGAGTGAGGCTGCGGGTGAGCCCAGTCTGTCCCAAGGAACAGCTGCGCCTACAGGGCCATCCTGGAAACCAGGCGACGGCAGTTAGCCCTTGTCATTTTCCCCTCCAGAGTTGTGGCTTTTGGGGGGAAGCTATGTGTGGACACAGCCCCGAGCCCTTTCTCTCACCGTGGACCATTTTCAGATGTGTCTTGTAAAGGTGGTCAAGAGGCTGACTTTTATGTTGGCTCCCTCTGGTGGCAGAACGTGACTACCCTTCTGAGTTCCCAGATAGATCAGGGAGCATTGGAAAGGATTTGAACACTGAGGATGAACAGAGCTGGGGTAGCAGGAAGAGCTGATTCCCTCCCACCTGCTTTTGGATGGCCAATGTGCAGCCTCTAGACTCCTCTGATGAAGGAGAAAAGGCTGTTGCCCAAACATCATCACTTAGAAACTTACAACTATTTTGTTTCTTCATTCAAGCTTGAGCTCATATCACGACACTGATTGACGCTGACCTCTCTCTGGAGAATGATCTTTGGCAGTTTTGACTGGCCCCCCTCCTGCATGTGCCCTCTGCCCCGCCTCTCCCTGCCTCTTCCCCTTGGGCTTTCGAGTCCTGTCACCTTTCTCTCTAGACTCCTGTGTTACCTCCAGCCCAGGGATAGGACACAGCAGGGGCCACAGAAAATGCTCAGTCGAGGGAAGAAACTTTAGACTCGCTGAGGGAGACTGACTTAGAATTCCAGAATCTGGGATTTGAAGGATGTGGTTTTACTGGTCAGAGGTTGGAAACCTCCTAGGGTGTCCAGCCAGGTGCCAGATGCTGTTAGGAGTGTGGGGGATGAGAGTGAGTGGCCAATACTGCCTTGGGGGAGTTTTTAGAAAGACAAACTCTTGCAGAACCAAAAAGCTAGAGAAAACCACAGAGTGGGGTAAAATTGAGCGGCCCCATGTTCAGAAGAGAGGAATCAAAAGGGGTGGGCCCAAGTTGGCTTTCTAAAGAGATGTGTGAGGCTCAGAAAGGCCAACGGGGAGAACTGGGTGCTCTGGGTTGGGGAACAGTGTGAACACAGCCTGGAGGCAGGGAGTTGAAACATTTATTTAATTTTCATTTTATTCCATCTCAATCTTGAAGCAACTTAAAGGACACATTCAATTAAATGTAGAACACAAATGAAAAATGAGGACCGAGGGAATAAACCCTAGAGTTTGGGGCTCTGTAGTTAGCTGTTGCACAGTCATTATAGCTGGAGCACATTTGAGGTCTGAACTTCCTAGTGGCAAAATGGAAATATCTATCCATCTGTCTATCTATCTATCCATCTGTCTATCTATCTATCCATCTGTCTATCTATCTATCCATCTGTCTATCTATATGTAGTTACTCACCCCCTCCAAGCTCGTTATTGTTTGACATTTATTCATTCAGCCACTGTATGTCAGCCCCTACCCCTTGCCATTCCAGCTCCATGGGGAATGAAGCAGAACCTAAAGAACTGTTCCTCGTGGGGTTTCTGGGGGACACTGAAAGAGTGACCTTGCCTTTGATGGCCAGGAGCACATACACCCCTAGGATCCTGTGCTTTCCCTTCCTAGCTGTGAAAATGAGGGAGGGATGGAGAAAAGTGGAGCCAGGCCCCTGAGTCTGTGTGTCCACTCCACGTCTGGCCTGGACACTTGGAGCACTTGCGTCCCTCTGACTCCCTTATGTGTGATGGTGGTGAAGTGGGGATTCTGGCTGGGCCTGCCTTCCTGCAGGACTGTGCTGCCCCCCAGTCCACAAAGGCCTGCTTGTGTTGCTGGCAG
Seq C2 exon
GGACGATCTGGCAGAGATGACCTACCTGACCATGTGCATCAAGGAGAGCTTCCGCCTGTACCCGCCTGTGCCCCAAGTGTACCGCCAGCTCAGCCAGCCTGTCAACTTTGTGGATGGTCGCTCTCTACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011976:ENSBTAT00000015892:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.8=100)
A:
NA
C2:
PF0006717=p450=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAAGGCATCAAGCTATCAGA
R:
CAGGTAGAGAGCGACCATCCA
Band lengths:
320-2110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]