RnoINT0044542 @ rn6
Intron Retention
Gene
ENSRNOG00000055078 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:RGD Symbol;Acc:2480]
Coordinates
chr5:134511067-134513836:-
Coord C1 exon
chr5:134513646-134513836
Coord A exon
chr5:134511201-134513645
Coord C2 exon
chr5:134511067-134511200
Length
2445 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GTGTCTTGTGTTGCTGGCAGGGA
3' ss Score
7.73
Exon sequences
Seq C1 exon
GATGAAAGTGGGATCAAGCTGTCAGATGCAGAGCTCCGGGCTGAAGTGGACACATTCATGTTTGAAGGCCATGACACCACCACTAGTGGTATCTCTTGGTTTCTCTACTGCATGGCCCTTTACCCTGAGCACCAGCAGCTATGTAGGGAGGAGGTCCGTGGGATCCTAGGAGACCAAGACTCCTTCCAATG
Seq A exon
GTGAGTGATCTGAGTGCGAGCTTGGCCCATCTTGCTCAGCCCAGGCACGGGTTGCACTCACCTTGCCAATGCCTGCCAAGGACAATCACAGCTGTTCCAGAGGTGAGGTGAGGTTGCTTCCTTGTTGTATAGTTTTCTTGGGAGGATTCATTCTTCACAAATGGAGGCTTTTCAGTGTCACATAAAATTGTCAATGGAGTCTGGATTTCATAATGGCAGAATATGAACCCCCGCTGGGTTTCTGGATAGAGTAGAGAAGGTTGAGAAAGAGGAAGCAGGAGATGAAGGTGAGAGGACAGCTGGGAATGGCAGTCCCTTGCCACCTGCCATCTGCCACCTGCTACCTTCCACCTGTTACCTGCTACCTTCCACCTGCTACCTTCTACCTGCCTCCTGCCTCCTGCCCCCTGCCACCTGCTACCTTCCACCTGCTACCTTCTACCTGCCTCCTGCCTCCTGCCTTTCGATGCCAGCACATAGCTCCCAGACTCCTCATTTATCTTCATAATGAAGGAGACTAATTTCTAAATGCCAAAATTTAAAAACTTCTATGTTGTCCCCTCTCCTTGTTCCTCAGCTCGAGCCTAAAGTCCTGAATGTGATACCAGCAGAGACAACTTTCTTTCAGAGTGTCTGGGAGTCCTACCAGACTCTCTTGCTGTTTCCTCTTTGTAGGCCTTTGTAGCCCGACAATAATCTCCTCCCACTGAGTTCCTGATGTGCCTCTAGCACTGGACAGGACACATAGTAAGGATACAGAAATTGGCCTATTAACATCAGGAATTTCTGTTCTCCTAAGGAGGACTGATCTGTAATTCCAGTGTCAGAGATGTGAAGGATGGAGTCTTTATAACTAAGGCTTATTTACTGGATGTAGGAAACTCTCCAAGGGGTCCAGCCATGAGCAAAGTGCTATCTGGAACACATTGCAAGTGTGAAGAGGAGAGGAGGAGCCAGTTTGTTACTCTTGGGGAGTTTTCAGAAGCCAGACTCACATGTTCGAAATCCAGAGAAGGACAGAATAACTTCAAGTGGCCTGGAACGGGGGTGTGTGTGAAGGGGAGGGGCTTGAATTGACTTTAAGGAAGATTAAACTTCAGGTGAAGAGAGCTGTGCATTCTATGCTAGAAAATCATGTAGGTGGTCTGAGGCAAAGGATTAAATGTGTATTTTATTTTTACTTAGTTTTATCCAGAATCCAAAGCAACTTCAAGGATGCTTATTTAATAAAATAGTACAAGAAATGAAAGGTCATGATTGTGGGGAGAGTGACTGGGAGTTTGAGGCTCTCTAAGATGGTATTATAGACTTCTGATGGTTGGATCTCACATTTGGGTCTGAGACTCCAGGTAGTTAAAGGGGTATTTGTATGAGTTTATCTTTATTCACCCATGGACATTGGTTGGTTCATTCAACTAAAAATTATCAGGCTACCTTTTTCCTTTCCAAGCCCACAGGGAAGCCAAGCAGAAAGTGCAGAAATGACTGTTCCACTTCCCATACGTCCCCCGTCTCCATCTCCAGGAGGATGTCCTCACAACTCCACCCCCAACCCACCAGACTCCCCCACTCCCTGGGGCCTCAAATCTCTTGAGGGTTAGGTGCATCTTCTCGGACCAAGTCCAGGCCCAGCAGTTATCTGCTGTATATGTGTTGGGGGCCTCATATCATCTGGTGTATGCTGCCTGGTTGGTGGCTCAGTGTCAGAGATCTCGGGGACACAGGGTGGTTGACTCTGCTGGTCAACCTTCCTACAGAGTCACCTTCCAGCTTTTTCCTAATTCAACCACAGGGGTCACCAGCTTCTGTCCATTGGTTGGGTGTAAATATCTGCATCTGACACTTTTAGCTGCTTGTTGGGCCTCTCTTATAGGGCTGTCTATAAGCACACCATAGCATCAGTAATAGTGTCAGGCCTTGGGACCTCCCCTGGAGCTGGATCCTGATTTAGGCCTGTCACTGGACCTCCTTTTCCTCAGGCTCTTCTCCCTTTATGTCCCTGCAGTTCTTTCAGACAGGAGCAATTCTGGGTCAGAATTTTTGACTGTGGGATGGTAACCCTATCCCTCTACTTGGTGACTTGTCTTTCTACTAGAGGTAGACTCTACAAGTTCCCTCTTCCCACTGTAGGTTATAAAAAAGAAAGTACAGAAATATCCCTTGTGCTACTTTAGCATGGCTCTATATGACACAAAAGTGGCCTTGCCTTTGAGGGTTGGGTGCACAAATGTCTCTAGGATCCTGTGCCTTCTCCTTCTAGCTTGCTAGGTCTACACGGTATCAGTGTTACATTATGCTTAGGCACTTGGAGCCCTTGTGACTCCTTGTCGGAAGTATGATGGGGACAGGAAGTGAAAACAATATTGTGCTGAGGTTGGTGATGGGGCCTACACTCTCCTGGGACCCCACTGTTCCCAGTTCTCAAGTGTCTTGTGTTGCTGGCAG
Seq C2 exon
GGATGATCTGGCCAAGATGACCTACCTGACCATGTGCATGAAGGAGTGCTTCCGCCTCTACCCACCTGTACCCCAAGTATACCGCCAGCTCAACAAGCCAGTCACCTTCGTGGATGGCCGCTCTCTACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055078:ENSRNOT00000013321:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.8=100)
A:
NA
C2:
PF0006717=p450=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]