MmuINT0045356 @ mm9
Intron Retention
Gene
ENSMUSG00000028713 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:MGI Symbol;Acc:MGI:103225]
Coordinates
chr4:115299412-115301464:-
Coord C1 exon
chr4:115301274-115301464
Coord A exon
chr4:115299546-115301273
Coord C2 exon
chr4:115299412-115299545
Length
1728 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
GTGTCCTGTGTTGCTGGCAGGGA
3' ss Score
7.91
Exon sequences
Seq C1 exon
GATGAAAGTGGGATCAAGTTGTCAGATGCAGACCTCCGGGCTGAAGTGGACACATTCATGTTCGAAGGCCACGACACCACCACTAGTGGTATCTCTTGGTTTCTCTACTGCATGGCCCTTTATCCTATGCACCAGCAGCGATGTAGGGAGGAGGTCCGTGAGATCCTAGGGGACCGGGACTCCTTCCAGTG
Seq A exon
GTGAGTGATCTGAGCATGAGCTTGACCCATCTTGCTCAGTCCAGGCACAGCTTGTACCCGCTCTGCCAGTGCCTACAAAAGATAACACACAGCTGTTCCAGAGGGGAGGTGATGTTGGCAGCATTTGTTTCTTATTGTTGTTGTATAGCTTTCTTGCGGGCTAACTATAGATGTACTCTCCTGCCCCAGTTCATTCTCCCCAAATGGGGGTTTTTCAGTGTCACATCAAGTTGTCAACAGAAGCTGAATTTCGTAATGACAGAATATGAATCCACACTGGGTTTCTGGATAGAGCAGAGACAACTGAGAAAGAGGGGGAAGCAGGAGATGAAGGTGAGAAGACAGCTGAGAAAGCTAATAATCCCTTGCTGCCTGCTACCTGCCTCCTGCCTCTGGATGCCAGCACATAGCCCCCAGATGCCACATTTCTTTTAATGGAAAAGGAGACTAATTTCCAAATACCAATACTTAAAAACTTCTATGTGATTCCCCCTTCTTTGTTCCTCAGCTCAAGCCTGAAGTCCTAAATGTGACACCAGCAGAAAACTTTTCTTTCAGAGTGGTCTGGGAGTCGCACCCAGACCTCTCTTGCTGCTTCCTCTTTGTAGACCTTTGTAGCCTGACAGTCACCTTCTCCCACTGAGTTCCTGATGTGGCTCCAGCACTGTACAGGACACATAGAAGGAATACAGAAATTGGCCTATCGGCATCAGGAGTTTCTGTTCTCCTAAGGAGGACTGATCTGTAATTCCAGCGTCAGAGATGTGAAGGACGGAGTCTCCATAATTGAAGTTTATTTAGTGAATGTTGGAAACCTTCCAAGGGGTCCAGCAATGAACAAAGTACTATCTGGAGCACATTGCAAGGGAGAAGAGGAGAGGAGGAGCCAGTTTGTTCCTCTTGTGGGAGCTTTCAGACAGTCAGACTCACATGCTTGAAGTCCAGAGAAGGCTGTAGGAGAGTAACTTCAAGTTGTCTGGATGTTGAGGGTAGAGGGGTGAGAAGGAGAGGGGCTTGAATTGACTTTAAGGAAGGTTAAACCTCAGGTGAAGAGAGCTGTACATTCTTGGCTAAATAATTATGTAGATAGTCTGAGGCAAAGATTAAATGCATATTTTATTTTCACTTAGTTTTATCCAGAATCCCAAGCAACATCAAGGACACTTATTTAATAAAATAGGACAAGAAATGAAAAGTCACAATTATGAGTTGAGTGATTTGGAGTTTGAGGCTCTCTAAGAAGATATTATATATAGTTCTGATGGTTGCGTCTCACATTTGGGTTTGAGCTTCCTGGTAGCCAAAGGAATATTTATATGACTTTATCTTTATTCACTCATGGAAATTAGTTGGATCATTCAACTAAAAATAATCAGGCTACCTTTTTCCATTCCAGGCCCACAGGGAAGCCAAGCAGAAATTAAAGAAATGTTCTTGTGCTACTTATTAAGGCCCTGTATGACACAGAAGTCACAAAAGTGCCTTGCCTTTGAGGGTTGGGTGCACAAATGTCTCTAGAATCCTTGCCTTCTCCTTCCATATTGCTAGGTCTACATGACCACCCAGTGTTACATTACACTTAGGCACTTGGAGCCTCTATGACTCCTCTGTTGGAAGTATGGTAGTGATAGGAAATGAAAACAATATGGTGGTGAAGTTGGTGATGGGGCCTACCCTCTCCTGGGACCACACTGCTCCTAGTTCTTAAGTGTCCTGTGTTGCTGGCAG
Seq C2 exon
GGATGATCTGGCCCAGATGACCTACCTGACCATGTGCATGAAGGAGTGCTTCCGCCTCTACCCACCTGTACCCCAAGTGTACCGCCAGCTCAGCAAGCCAGTAACCTTTGTGGATGGCCGCTCTCTACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028713-Cyp4b1:NM_007823:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.009
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.8=100)
A:
NA
C2:
PF0006717=p450=FE(11.7=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAAAGTGGGATCAAGTTGTCA
R:
TAGAGAGCGGCCATCCACAAA
Band lengths:
318-2046
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: