HsaINT0044450 @ hg38
Intron Retention
Gene
ENSG00000142973 | CYP4B1
Description
cytochrome P450 family 4 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2644]
Coordinates
chr1:46815074-46817181:+
Coord C1 exon
chr1:46815074-46815264
Coord A exon
chr1:46815265-46817047
Coord C2 exon
chr1:46817048-46817181
Length
1783 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TCTGGTTGTGTTGCTGGCAGGGA
3' ss Score
6.33
Exon sequences
Seq C1 exon
GATGAAGATGACATCAAACTGTCAGATGCAGACCTCCGGGCTGAAGTGGACACATTCATGTTTGAAGGCCATGACACCACCACCAGTGGTATCTCCTGGTTTCTCTACTGCATGGCCCTGTACCCTGAGCACCAGCATCGTTGTAGAGAGGAGGTCCGCGAGATCCTAGGGGACCAGGACTTCTTCCAGTG
Seq A exon
GTGAGTCTGAGGGTGGGCCCGGTTTATCCTGCTCAGCCCTTGGGAAGGGCGATGCCCATCCTGTCCTGAACCATCCTGGAAATCAGGTGAGGTGGCGGCTGCTATCCTGTTACCCCCAGTGTCATACCTTTTGTGGTGGTGGGGGGTGGGGAGAGTGGTTGGCTGGGCACAGATGCACCCCTGAGCCCATTCTCCCAAAATGGAGCCTTTCAGAAGTGTTATGTAGAGAAAGTTGTCAACAAGAGGCTGATATTTTGTGTGCTAACTTCTTCTGACGGTAGAACCTGATTACCCTTCTGGGTCCCTGGATAGAGTAGGGAGAGCTGGGAGAGAAAGAGGTGGAAATGTGGGGGTGAACAGAGCTGAGACAGCTGGGAGAGCCAGTTCCTTGCTACTTGCCTTTGGATGGCAATACTCAGCTTCCAGATGCCATATCTCTCCTGCTGGTGAAGGAGAAAAGACTTCCCCAAACTTCATCACTTAAAAACTTTCCATTGTTTTCCCCTGTTTCTTGGCTCAAGACTGAACTCCTAAACACTTAAGGATTGACCCTGACCTCTCTGCAGTGTGATCTCTGGGAGTCTCTCAAGAGGCTCCTTCACCCTTGCTGGCTGCCTGTTCCCCTCAGGCCTTTGCTTGTGGTCAGACAACCTGCCTTTCTCTCTGGGCTCCTGAGCAGCCTCCAAGAGGGGGCTAGGCACACAGCAGGGGTACAGAAAATGCTGAGCCAGAGGGGGAACTTTAGATCCACTTGAAAGGGACTGACCTATAACTCCAGGGTCTAGGACCTGGAGTATGAAGCCTCCATTACCATTTCTGTTGGTCATATGTGAGAATCCCCCCCCCACGGGGTATCCAGACACATGCCAGGTGCTATCAGGGGTGCAGAACGGAAGAGAAAGAGAAGCCATGCTGCTCGTGGGGAGTTTTATGGAGACAAATTCACATAATCAAACAGCGAGAGAAAAATCACAGGATCACGTGGTCTGAATGTTGAGGGCAGAGGGAAGGAGTGAGGCTTGAACTGACTTTCTAAGGAGGGTTAAAATTCAGGCAAAGAGAGAGAGGTAGGCATTGTAGGCTGGGTAACAATGTGAACACAACCCGAGGCAGGGATTAGAATATTTATTTTATTTTCACGTCATTCCATCTAGAGCTTGAAGCAACTTAGAGGACAGTTATTCAATAAAATAGTAAAATGCAAATGAAAAATAAGAGCCAGTGGGGAGTTTGGGGACTCTGCAATAAAATATTGCCCTGTAGTTATAGTTGGATGTCACATTTGGGCCTGAGCTTCCCGGTTGCCAAAGGGAAAAGACACACACACACACACACACACACTTCACCTCATTAAATAATGCATCAACTTTGGTTGGTTCATTCAACCAACGTGTATCAGCCCCAGTTTCTTTCATTCAGCTCAGTAGGGGAAACCAAGCTGAAACCTAAAGAACTGTCCTTTGTAGGCTTCCATGGGGGTCCTGAGAGTTGCAGAAGTGACCTTGTCTTTGATGGCTGGGTGCACCTTCATCTCTAGGGTCCTGTGCCTTCTTCTCCTACCAGTGAAGATGAGAAAGGGATGGAGAAAAGTGGAACCAGATCCTTTAGATCTGAGTGTTCACACCATGTCAGGCCTAGCCTGGCCAGGGGCACTTGGAACTCTGTGCCTCTGACTCTTGAGTGTGTGGTGGTGGTGAGGGAGGAAAACTGGGGCTGGGGTCTGCTTTCTCGCCAAATCCTGTTGCTTCCCATTCCAAGAATGTTCTGGTTGTGTTGCTGGCAG
Seq C2 exon
GGATGATCTGGGCAAAATGACTTATCTGACCATGTGCATCAAGGAGAGCTTCCGCCTCTACCCACCTGTGCCCCAGGTGTACCGCCAGCTCAGCAAGCCTGTCACCTTTGTGGATGGCCGGTCTCTACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142973:ENST00000271153:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.8=100)
A:
NA
C2:
PF0006717=p450=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCAAACTGTCAGATGCAGAC
R:
GTAGAGACCGGCCATCCACAA
Band lengths:
310-2093
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development