BtaINT0046511 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008232 | DAB2IP
Description
Bos taurus DAB2 interacting protein (DAB2IP), mRNA. [Source:RefSeq mRNA;Acc:NM_001144082]
Coordinates
chr11:92649388-92652226:+
Coord C1 exon
chr11:92649388-92649589
Coord A exon
chr11:92649590-92652047
Coord C2 exon
chr11:92652048-92652226
Length
2458 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
3' ss Seq
CCTTTGCCGTGTCTTTGCAGAGC
3' ss Score
10.94
Exon sequences
Seq C1 exon
GTTCGGCAGCAAGGAAGAGTACATGTCGTTCATGAACCAGTTCCTGGAGCACGAGTGGACCAACATGCAGCGCTTCCTGCTGGAGATCTCCAATCCCGAGACCGTCTCCAACACGGCTGGCTTCGAGGGCTACATCGACCTGGGCCGCGAGCTCTCCAGCCTGCACTCGCTGCTCTGGGAGGCCGTCAGCCAGCTGGAGCAG
Seq A exon
GTGCCTGACCACTTGGGCCATGATGGGGCAGTGGCTGGGCCCTAGGGCACTGAAGCTGCAGGCTGCTCCTCCCGGAGTAACCACGAGGCCTGAGGCTTTGCCTGTGCAGTAGAGATCAGCGGCCCCACCAGGGCGCCAGAGCCCAGGGATCCAGTGCAGGCCCTGTCAGCACGTGCTGGGGAGGGATCTCGGCCGTTATCCTTGATGGCGAGTGCCACGTTCACGCACTGACATCTGCCAGGGTAGCCCACTCGGTGTACTGGGGCCTCAGCTGTGCCTCTGAGTGGATGGCATCCATGGGTGAAGGCGTGCTGTGCTCCCTACCCGTGGGAAGTATGATCAGATTTAGCTGTGTCTCCTAAAATGTCCTTGCTCTGGATTTTAAGGCCACTGATACAAAAAAGATGGACTGGAGATGCTGCACCTCCATGTGTCAGGCAGCAAGTTGCAAAACTTTCCAGAAGTGCCCTTGACCATCTGTTGAAACAGTCATTCCCTCAACACCTCTGACACTGCTACAGGGCCTGTGGCCTGGGTTCCACTGCCCGCAGCAGGCCCAGCCTGCACAGTGGGCAGGTTCTGGGCAGCAACTGCCAGGCCTGCCAGGACCCACTTCCAGAACCTCTGCTGCTCCCCAGGGCTCTGAGAGCCCATCTTACAAAAGTTCAGTTCAGTCGATCAGTTGTGCCTGACTCTTGGCGACCCCATGGACTGCAGCACGCCAGGCTTCCCTATCTTTCACCAACTCCCAGAGCTTGCTCAAACTCATATCCATTGAGTCGGTGATGCCATCCAACCGTCTCATCCTCTGTCATCCCCTTCTCCTACTGCCTTCAATCTTTCCCAGCATCAGGGTCTTTTCAGTGAGTCAGTTCTTCACATCAGGTGGCCAAAGTATTAGAGTTTTAGCTTCAGCATCAGTCCTCCCAATGAATATTCAGGACTGATCTCCTTAGGATTGACTGGTTGAATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGCATCAACTCTTCAACACTCAGCTTTCTTTATGGTCCAACTCTCACACCCATACATGACAACTGGAAAAACCATAGCTTTGACTAGATGGACCTTTGTTGGCAAAGTAATGTCTTTGCCTTTTAATATGCATTAGTCCTTCCAATGAATATTCAGGACTGATTACAAAAGTAGCTGCTGCTGAACCAGAGCTGGAAGGCCTCCTGCTCCCGTCCCATCCTTAGGGGTGAGCACTCAGGGCGCTCTGATGTGCGGCCTTCTAGGCACTTCTGTGCACATGTTAGGTACCCACACAGGCAGTTCTTACCCTTTTCTGTTAAAGTGAGAACGTAGCGTGCACTGCTGCATGCATTGCTCACTCTTCTCTCATGGGCATCTTTCCCCAACCATACGTGCCACACACCACTGTGACCTTTCTAATGGCACAGACTGTCCAATCATGTGACTGCACCATGCAGTTCACTGGACACTCAGATCAGTCCCAGCTTTTCACTATGAATGGCCATTACAATCATTTTTGCTCCTTTATGTCCATTGCCCTTTGGCTCTGAGAGACCCAGGAGGGAGCAACGGAAATGAGGCTCAGAGCCCTGTCTTCCTCCACAGCTGCCAACACCTGTCACTCTGCCACCACTTCCAGAGCCTCTGTGCTGGGGGCCACCATCCCCCATGCGTGCATGACCAGGCGGGAGGTATGGACGGTGGTTTGCAGCCGTCACAGCTGACAGTGTTGCAGCAGGATTTAAAGTCGAGCTGTTTGCTGCTCACGTCTCCCCTCTGTGGACCACATGAGTTTTCATGCTTGCTTTCTGCACATAGCCGTTGGTGGAAGCCGGGACATAATCCAGATGAAGGCAGAGTCCCCCCAACCCCCAACCCGCTCGGCCTAGAAGCTTTACCGCCATTGGTCTAAACCAGGACAGTGGGCTTCAGACGAGCCCAGGCACCACCCTCTGCCTGACTGGCCACTTGTTTGTCTGACAGGTGAGCAGGAGTGCCTGCTCTGTGCCTGGGCCATCGCCCCGGGCACTCGGGTGTTGAAGTGGGTCGGGCCTCAGCCCGCCCTGTGCAGTAGATGACGTGGGAGGGGGCCACCCCAGAAGCCTCTCCACTGGGGAGACGGGGGCAAACTCCAGGATCCTCTGTGGGCCCCTGAGACAGGACAGACCAGGGTGAAAGGCTTGGACTAGGTTAGTGTGTCTTCCTGTGGGCCTTGCCCCCATCCTAGAGATATCCAAGGAGCTGATAAAAATGTAATTTGTCGTTTCTGGGCTCCCTACCCCTCCCCAGACCCACTGAATCTGATTGCAGGGGAGGGCGAGCCTGCAGCTCTGACTGGCTGCTTAGTGATTTTGAACACGGTGGCTCCAGTGCATTTGGCCTCCCCAGGTGCCCCCTGGCTCACACCTTCCCCCTTTGCCGTGTCTTTGCAG
Seq C2 exon
AGCATCGTATCCAAGCTGGGGCCTCTGCCTCGAATCCTGAGGGACGTCCACACGGCTCTGAGCACCCCGGGCAGTGGGCAGCTCGCAGGCACCAACGACTTGGCCTCTACACCTGGCTCTGGCAGCAGCAGCGTCTCGGCTGGGCTGCAGAAGATGGTAATCGAGAACGACCTGTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008232:ENSBTAT00000032823:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.417
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120043=DUF3498=PU(9.1=78.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development