MmuINT0046464 @ mm10
Intron Retention
Gene
ENSMUSG00000026883 | Dab2ip
Description
disabled 2 interacting protein [Source:MGI Symbol;Acc:MGI:1916851]
Coordinates
chr2:35717071-35718938:+
Coord C1 exon
chr2:35717071-35717272
Coord A exon
chr2:35717273-35718759
Coord C2 exon
chr2:35718760-35718938
Length
1487 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
3' ss Seq
GCCTGTTTCCATTCTTGTAGAGC
3' ss Score
8.49
Exon sequences
Seq C1 exon
GTTTGGCAGCAAGGAAGAATACATGTCCTTCATGAACCAGTTCCTGGAGCACGAGTGGACCAACATGCAGCGCTTCCTGTTGGAGATCTCCAACCCCGAGACCCTTTCCAACACAGCAGGCTTCGAGGGCTACATAGACCTGGGCCGGGAGCTCTCTAGCCTGCACTCCCTGCTCTGGGAAGCTGTCAGCCAGCTTGATCAG
Seq A exon
GTGCCTGTTGCCTGGGTTAGATGGTATATCTGCTAGGTTGGAGGCCCTACACCTGTGGGCCAATCAGCTTGTAGTGGGGCTCTCTCTGGATGTTCACTCCCCAGCCGTTATAGCCGTTAGCTCTGCGTACTAGGTCCAGGTCTACCCCTGTGTGCTCAGCTCTGATAGCCCAGGTACACAGTGATGCTCATTCCTTACCCAAGCGGGAGAGGAGAGGGTCTGACTTAGTTGCTTTACTGAAAAAGCCCGTGCTCTTGGTTTGTAGGTACTGAGAAAGAAAGGATACTGAGGTCCTCCATGTGACAGATCAGACTTGGGAACCTCTGTAGAGCAGGACTTAGAGCTCAGTGGCAATGTACAAGGCCCGAGTTTGGTCCTAAATTCAGGAAAAAAAAGAAACTGTTTCATAATTGCCATTAGCTGTCAGTGGACAGGATTAGTCCCTGCATGCCTGACGCTGCTTCAGTTACCTGGCCCAAGAAACCCTTCCCTAGCCTGGAGCCCTGCTGATCTCAGTGGCTGTAGCCTACTGTGTTTACCAGGAACCACTTCTTAACTCACCTTGCTTTCCAGGGCGCTAGGGAATCACTTTACACAAGTGATGATTGCTGACCCCAGGCTGGTACCCGCCTCTTGTCCATCCTGGAGGTGATTGCTTTGCCATCTCATAGACACATCCTTACATTCAGGCACAAGTACATGTGGGTTTCTGCCTTTCAGTTTGTTTTCCAGTGAGAACTTAGCTGTACATGGTTGTTGTACCTCTCATCCACATTGTGAGTGTCTTCCCATGTCACGTTACTCACCACTACCTCTGGCCTTTTAGTGCAGTGGAGTATCCTGTAGTGGGAACACTGTATCTCACCCACTTCTCGCTGCCACTCTTGCTGTTGAAATTGCAGGAATGCAGTTTTGCTCATGACTTCCTCCCTCCTTCCGTTCCTGAGCCAGTATGCTGGTCACTGTCCCATGGGTCTCAGAACCAGGCAGGAAGTACAGAAAATGATCAGTGTTGTCACACAGGCAATAGGGTGTGACAAGAATGTGAGATGGAACTGTTGCCCCCACAGCTCTGCCATGGGGTTGCCAGCTCTTTCTTTCAGGGCTTTCCACTGCATGGTAGTGTCCGCTCCTTCAGCTCAGCTGGAATCCTCTACACATCTGTGCTGTGACACGGAGGTTCAGAAGGCACTAGGCCTTCCTCTCTTGGGCCTAGGCACTGTCCTTTCTTAGACCAGCACCTTGCATCTGTTCTGTATCTGGCCTCTACAGGCTCAGGCATCAGAGGGTGCTAGCCCACCTCCTTGATGAAGTAGGTAATTTGAGGGGCTACCAGAGATGCCTCTTGGGTAGGGAAGTGTAGGCTGGGAGATTGGGGGCTATGACAAAGCAGATTTGCAGTACTCTCTTGCTGGGTCTGACCGGTGGGGGTCAGGGCTCTGAGTTTCTGTGACATAGGTGACAACTGCCTGTTTCCATTCTTGTAG
Seq C2 exon
AGCGTTGTGTCGAAGCTGGGACCTCTGCCTCGTATCCTGAGGGATGTCCACACAGCACTGAGCACTCCTGGCAGTGGGCAGCTCCCTGGCACCAATGACCTGGCCTCCACCCCGGGCTCCGGCAGCAGCAGCGTCTCTGCTGGGCTTCAGAAGATGGTGATTGAAAATGACCTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026883:ENSMUST00000112983:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.492
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120043=DUF3498=PU(86.8=76.7),PF120043=DUF3498=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGCAAGGAAGAATACATGT
R:
CCATCTTCTGAAGCCCAGCAG
Band lengths:
356-1843
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types