HsaINT0044756 @ hg19
Intron Retention
Gene
ENSG00000136848 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:17294]
Coordinates
chr9:124530711-124533003:+
Coord C1 exon
chr9:124530711-124530912
Coord A exon
chr9:124530913-124532824
Coord C2 exon
chr9:124532825-124533003
Length
1912 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
3' ss Seq
CTCTTGCTGTGCCTTTACAGAGC
3' ss Score
9.96
Exon sequences
Seq C1 exon
ATTTGGCAGCAAGGAGGAATACATGTCCTTCATGAACCAGTTCCTAGAGCATGAGTGGACCAACATGCAGCGCTTCCTGCTGGAGATCTCCAACCCCGAGACCCTCTCCAATACAGCCGGCTTCGAGGGCTACATCGACCTGGGCCGCGAGCTCTCCAGCCTGCACTCACTGCTCTGGGAGGCCGTCAGCCAGCTGGAGCAG
Seq A exon
GTGCCTGTTGCCGTGGGGCGGAGGTGGGGCCAAAAGCTGCCATCAGGCTTTTAGTGTTCCCCCTTCCAGAGTAACCATGGAGGGCAGAGAGTTTGCCCAAGTGGCATGATCAGGCCAGGTCCTGTCAGAACACACTGGGGATCTGTGGGCCCCATTTTCTCTGTGGGCAAATGCTATGTTCACTCAGCAGTATCTGCCAAGGCTGCCCCACTCTGGGTACTAGAGCTGGGGTGTTCCGCATGCACTCAGCCTTTAGTGGACAAGCGCCACTGTGCTGCCTGCCAGAGCATGTGAGAAATAGAATTGGATCGTGAATCCGCCTGTATGAAGAAGATGACTCAAGACCCTGTACCTCCACTTGTCCAGCAGGAAGTCGAAAACCTTTCTAGGATTGCCCTTGACCATCAGTTGACAAGGTTACTCCCTAGACACCTCTGACACTGCTGCAGTCACCTGAAGTGAGCCCTCCCTAGCCCGAGACTTCACTGACCCCCAGCCTCAGCCCACACAGTGAGCAACTAGTTCTTGGACTTAAGGGCTGGGTCTACCAGGAACTACTTCCCGAATATCTGTTGCTTTCTAGGGCTCCAAGGGACCACCTTACTTTTGTAAGGTGCTGAAACTGGCCTGGAAGGCCCTTCATGCCTCCTGGTCCCATTCCCTAGAGGTGACCGCTCAGAGCACTGGTATGCAGCCTTCTGGACACGATCTGTGCATGTGTAAGCGCACACACACATGCAGGCGCACACACATAGAGCTCTTTTCCTTCTTCAGTTTGTTTTAAAGCAAGAACATACTGTGTATGCTGCTGTGTGCATTTCTTACCACTGTGTTGTGGGCCTCTTTGCTTGTCAGTGCAATCTCCACCACCCCCAGGGACTTTTTAATGACTGCATTGTATGAATGCTATTTATTTCACCAGTCCCCTATTGATGGACACTTAGGTTAGTCCTGACTTTTCACTAGAAATAGGTCCTGTTGCAATCAAAGGCCATCATTTTTGCTCATTTGTATCCACTTGCCTTTGGCTGTGAGAGACACAGGAGGGAGAAATGGAAATGAGGGCTGAGACCCTACATTCCACCTGTTCCAGTCCCTGCACTGCAGCCAACACTAGTCACTGTCACTGCCACCACTTACCTTTCCCCTGTGCTGTCCACGTATCTGCACAACCAGGCAGGAAGAATGGAAGGTGATCAGTATTGTCACATCGGTGATAGGGTGCAACAGGGATTTGAAACTCAACTGTTTGCCTCTCAATTGCGTGCTCTATTGCCTGCATGAGTTTTCACACTTTGTTTTCTCACAGAGACCTCTGTGGAAGCTTGTGCATAAACAGGTGAAGGCAGTGTCCCCAAAGCCTAGAATCCTCTGCCCCTTAAGTTCTCTAAAGCGTGCCAGCAAGGTTCAGATGGGTTCAGGCACTGCCTTCTGCCTGACCAGCACCTGAGGGTGCCTGCAGTGTGCTTGGACCATCTCCACTGGGGCTCAGGTGCCAAGGTGGGTCAGGCCCCAGCCCATCCCGTGGAGTAAGTGATGTGAGAGGGGCTGTCACAGAAGCCTCTGGATGGAGAGGTGGAGGTGTGGAAATGCTGGGATTCCATGTGTGCTTTCCTCTCTGCGGAGGCACCAGGGCAGGGCAAACTGAAGGAGAGGCTTGCACTAGGTCAGCGTCTCCCACTGTGGGCCTCCTACTCCTGCCCTAGAAATGTCCGGGAGCTGGTTAAAAATGTAGATTTACCGATTCCTGGGCTCACCCCCCTCCCAGACCCAGTGGCTCTGACTGGCAGCAGGTGGGGATCTGCACTTCTGACAGGCTCCGCAGTGGTTTTGAGCCATAGTGGCTGCAGCACATACAGCCTACCCATGTGGTCCCAGGAGGTCACACCTGCCTCTTGCTGTGCCTTTACAG
Seq C2 exon
AGCATAGTATCCAAACTGGGACCCCTGCCTCGGATCCTGAGGGACGTCCACACAGCACTGAGCACCCCAGGTAGCGGGCAGCTCCCAGGGACCAATGACCTGGCCTCCACACCGGGCTCTGGCAGCAGCAGCATCTCAGCTGGGCTGCAGAAGATGGTGATTGAGAACGATCTTTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136848-DAB2IP:NM_032552:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.467
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120043=DUF3498=PU(9.1=78.3)
Main Inclusion Isoform:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCAAGGAGGAATACATGT
R:
CACCATCTTCTGCAGCCCAG
Band lengths:
357-2269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)