DreINT0054623 @ danRer10
Intron Retention
Gene
ENSDARG00000069484 | dab2ipa
Description
DAB2 interacting protein a [Source:ZFIN;Acc:ZDB-GENE-081104-516]
Coordinates
chr8:12116419-12118598:-
Coord C1 exon
chr8:12118397-12118598
Coord A exon
chr8:12116598-12118396
Coord C2 exon
chr8:12116419-12116597
Length
1799 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
AGTCCTCCATTGTGTTGTAGACT
3' ss Score
7.27
Exon sequences
Seq C1 exon
GTTTGGCAGTAAGGAGGAGTACATGTCCTTCATGAATCAGTTCTTGGAGCACGAATGGACTAACATGCAGCGCTTCCTGCTGGAGATCTCCAACCCAGAGACCATCTCTAACACAGCAGGCTTTGAGGGTTATGTTGACCTGGGCCGTGAACTCTCGTCTCTTCATTCTCTCCTGTCTGAAGCAGTCTCACAGCTCGATCAG
Seq A exon
GTAGGGGTTTGCTTTTCAACGAATATAATAGAAATAGAAAAGAAAAGTATGAAGTTAAATTCAAAATTACTCAATATTCAATATTAATATTATTCAATATTATTTCTTTTTCTTTTTCAAACATTTCGCAAAAAATAATTAACATAGCATGGATTTCCTATAATATTTTTTCTTATTATTTGTTTCATTTTGGCTACAATAAAAGCAGTTTTATATTTTTTAAAACCATTTTAAGGTCAAAATTATTAGCCCCCTTAAGCAAAATTTTTTCGATTGTCTACAGAACAAAATCATTATTATAGAATGGCTTGCATAATTACCCTAATGTCCCTAGTTAACCTAATGAACCTAGTTAAGTACTTAAATTTCACTTTAAGCTGAATACTAGTATATTGAAAAGTATATAGTAAAATATTATGTACTGTCATCATAGCAAAGATAAATTAAATCAGTTATTAGAGATGAGTTATTAAAACTATCATGTTTAGAAATGTGTTGGAAAAATCTCTCTGTTAAAAAATATACAGGTGGGCTAATAATTCAGGAGGGGTAGTAATTCTGACCAACTGTATGTTGAATAAATTAGGTATTTCTTCTGTAATTTACTAATTCATCTAGTTTTTATGTGAAATATATTAAAATGGAAGTTTACCATGGAAGTCAATGGTTACCAATTTCCAGCTTTCTTCAGAATATCTTCATTTGTGTTCAACAAAAGAATAAAACTCAAACAGATTTGTGACAAGTCAAGGGTCAGTAAATGATGACAGAATTTTCAGCTTTGGGTCAATCTTTAATTATGTTATGTTGCCAGATTTTGCTAAAATAAGAACAAGCCCTAATTAAAATGAATCCCAAACTCTATATTATCAAAAAAACACACATACCGAAATATTGTGGCCTGCACCTGGCTACTTTATTAACTTCATAAACTGGTTTGCTTAATCCCAAAGAAGCTTAATAGCATTTGCTTAAAATATCTGGACATGGCAACAAAAGTGTGAAGAATATGAAGAAGCCCTTTAAATGTAAACAAAACTCAACTTCTGTGTCAACAGTAGCTCATTTAAAATGGCAAATAAAACCTTTTTATTAGGCCAGGAACCATGTATGGTAACTTAATAGACTTGATTATTTTTCATTTATTATTTTAAGTCAAGGCTGCACAGTTGCTCAGTGTCTCCCAGCAAGAAGGTCACTGGTTCAAGCCCCAGCTGGGTCAGCATGTTCTCCCCATTTTGCTGCATGTTTTTTGGAGTTGTGGGGGGAACCAGAGCACCCGGAGGAAACCCACACAACTCCAAAAACATGCAGTATAGGTGAATTGGATAAGCTAAATTGTCCGTAGTTTATGTATGTGTATGCGAGAGTGTATGGGTGTTTCCCAGTGATGGGTTGCAGCTGGAAGGACATCCGCTGCGTAAAACATATACTGGATAAGTTGGTGGTTCATTCCGCTGTGGCGACCCCTGATTAATAAAGGGACTAAGCCAAAAATATATTGAATGAATTTTCAAGTTTAAAAGTCTTGTAAAACACTACACGTACAGGTTTTTTTTATTTTAATGAGTGCTCTATAAAGGGTTAAAGAACAAATCTTTCGTCACAGTAAAATTCATTTGTTCTGAGTGTAAATAATTGCAAGAGCGAGTCTTCTTCCCTAACATTAGGTAAAGCAGTTTACTTGCATATTTGAATGCAGTTATGCTAAAATTATATAGTGTGTGTACCGCCACTGTGAGCTCACACTGCTCTAAAAGTTGGATTGCAGACAGTCACAGTCCTCCATTGTGTTGTAG
Seq C2 exon
ACTACCATCACCAAGCTGGGACCTTTAGCTCGGATCCTGCGAGATGTGAATTCAGCCCTTACAAACCCCACCGGAGCCCCTGTACCGTCTCCCACTGAGCGTGTCGGGTCACCTAGTCTACCTAGCAGCAGCCTGTCCACCGGTCTGCAGAAGATGGTGATGGACAGTGAGATCACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069484:ENSDART00000135812:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.545
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120043=DUF3498=PU(9.1=78.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGTAAGGAGGAGTACATGT
R:
ATCTTCTGCAGACCGGTGGA
Band lengths:
354-2153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]