GgaINT0124833 @ galGal3
Intron Retention
Gene
ENSGALG00000001419 | DAB2IP
Description
NA
Coordinates
chr17:9302966-9303934:+
Coord C1 exon
chr17:9302966-9303167
Coord A exon
chr17:9303168-9303755
Coord C2 exon
chr17:9303756-9303934
Length
588 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
CTCTGCTCTTTTCTCTCCAGAGC
3' ss Score
11.42
Exon sequences
Seq C1 exon
GTTTGGCAGCAAAGAGGAATATATGTCTTTTATGAATCAGTTTCTGGAACATGAGTGGACCAACATGCAAAGATTCCTACTGGAGATTTCCAATCCAGAAACCATCTCAAACACTGCTGGCTTTGAAGGCTACATTGACCTGGGCCGGGAACTGTCCACTTTGCACTCGCTGCTCTGGGAAGTCATTTCTCAGATGGAGCAG
Seq A exon
GTAGGGGGGCTGCAGGGACAGGATTCGGCCAGTGCTGGGCACATGGGCTGCTCTGCAGCATACACCTCCCCTTTGTCCAGCCAGTACCAGCCCACTAGGGTGTAGGAGCACAGCACAGCTCCTACTGTCTCTTGGCTCTTGTTCCACCTTTGCACATGCTGCTGAAGGAGCTCATCCTTCGTGGCTGGCAAGTACTGTCTTCTGCCTCTGTTGTTCATCACTGAGGGGTGAAGATGGTGAGATGTGAAGGCAGAGCTGCTGAACACTGGGCTGCCTTGTTTGTCCCAGCAGATTCCTTTTAAATTAAAAAGATTTCTGTCCGGTGACCTGAACCAGGCTTGGCCACAGCTGTCTCTTCTTTGTCTGGACCATGTGAAGTGTGCTTGCTTCATTCTGCCCCACAGCTGCAAATGATTTCTGAAGCTGTGTGTTCTGATAGGCTGTAGCCTTGGCAGTGGGGTTAAATGTTGGAGAAAATGAATGTTGCTAGCTTAGTTCACTGAAAGAGACTGCCCAGCAATTGGCAGAACCTGAAGTTCTCTTGCAGAACCCATGATGTTGGTAGTAACTCTGCTCTTTTCTCTCCAG
Seq C2 exon
AGCACTGCAACAAAACTTGGCCCTCTGCCGCGGATCCTGAGGGACGTCAACTCGGCGCTCAGCAACCCGGCCTGCGTGCAGGTCTCGGTCACAGCCGACCACACTGCATCCACTCCCAGTGCTGGCAACAGCATCTCTGCGGGGCTGCAGAAAATGGTGATAGAGAATGACCTACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001419:ENSGALT00000002162:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120043=DUF3498=PU(9.2=78.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCAAAGAGGAATATATGTCT
R:
TCACCATTTTCTGCAGCCCC
Band lengths:
358-946
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]