RnoINT0044829 @ rn6
Intron Retention
Gene
ENSRNOG00000055226 | Dab2ip
Description
DAB2 interacting protein [Source:RGD Symbol;Acc:621686]
Coordinates
chr3:15046405-15048308:+
Coord C1 exon
chr3:15046405-15046606
Coord A exon
chr3:15046607-15048129
Coord C2 exon
chr3:15048130-15048308
Length
1523 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCT
5' ss Score
8.16
3' ss Seq
GCCTGTTTGCATTTTTGCAGAGC
3' ss Score
8.76
Exon sequences
Seq C1 exon
GTTTGGCAGCAAAGAGGAATACATGTCATTCATGAACCAGTTCCTGGAGCACGAGTGGACCAACATGCAGCGCTTCCTGTTGGAGATCTCCAACCCTGAGACCCTTTCTAACACAGCAGGCTTCGAGGGCTACATAGACCTGGGCCGGGAGCTCTCTAGCTTACACTCTCTGCTCTGGGAAGCTGTCAGCCAGCTTGATCAG
Seq A exon
GTACCTGTTGCCTGGGTTAAATGGTGTATCTGCCAGATTGGAGGGCTCATCGGTGTGACAGATTCACTTGTAGTGAGGCTCTCTCTGGATGTTCACTCCCCAGCACTGGGCACTGGGTCCAGGTCCACACCTTTGTGCTCAGCCCTGATAGCCCAAGTACACAAGCGAAGGCTCACTCACTCCTTACCTCAGTGGGAGAGGAGAGCGGTCTGGCTTAGTTGCTTTACTGAAAGTGCCCTTGCTCTCGGTTTTATAGCTACTGAGAAGGGAAAGATACTGAGGGCCTCCACATGAGAGGTCAGACTGTGGGAGCCTCTGTAGAGCAAGCGCTTACAGCTCAGTGTCGATCGATCTGCCACATTAGCTGTCAGTGGACAGAATTAGGCCCTGCATGCCTGACATTGCTTCAGTTACTTGGCCCAAGCAGCCCTTCACTAGCCTGGAGTCCTGCTGATCTCCAGTGGCTGTAACCCACTATACCCTGCCAGGAACCACCTCTTAACTTGCCTTGCTTTCCAGGGCCCTAGGGGATCACTTTACAAAAGTAATGATTGCTGACCCCAGGCTGGTCCCTGCCTCTTGTCCATCCTGAAGGTGATTGCTGGGCTGGGCTGGGCCAGGCTGGTCCCTGCCTCTTGTGCATCCTGGAGGTGTTTGGTTTGCCATGTGTCTTATAGACAGACACATCCTCACACTCAGGCATGAGTACATACGGGTCTGTGTTTTTCAGTTAGTTTTCAGGTGAAAACTTAGCTGTACACAGTCGTTGTGCCCCTTGTCCCCTTGTCCCCATCGTGGGTGTCTTCCTACATCACATTACTACCACTGCCTCTAGCCTTGTAGTGCAGCACAGTATCCTGGAGTAGGAACCCTGCATAGCTCACCCACTGGTGCACTGGAGTCCCAGCTCACACTGGCACTCTTGCTGTTGAAATTGCAGGGACACAGTTTTGCTCATGGCTTCCTTCCTCCCTTCATTCATGAGCCAGTATGCTGGTCACTGTCCCATGGGTCTCAGAACCAGGCAGGAAGTACAGAAAATGATCAGTGTTGTCACAGAGTGATACAGTGTGACAAGAATGTGAAATGGAACTGTTGCCCCCATGGCTCTGCCATGGGGTTGCCAGCTCTTACTTGCAGGGCTCTCCACTGCTTGATAGTGTCCCCTGCTTTAGCTCAGCCAGAATCCTCTACACATCCATGCTGTGACAGGGAGGCTCAGAAGGCACTAGGCCCTCTCTTGGGCCTCGGCACTTGTCCTTTCTTGGGCCAGTGCCTATATCTACAGCTCAGGCATCAGATGGGCGAGCCCACCCCTTCCATAAAGTAGGCAGTTTGAGGAGCTACCGTAGATGAGACCCAGAGTGTGGGGCAGCTTGAGAGATGAGCTGTCATTTGAGAGGTTGGGGGTTACAACAAGCAGATTTGCCCCACTTTCACAGACTTGCTGGGTCTGGTCGGTGAGAGTCAGGGTTCTGTATTTCTGTGACATAGGTGACAACTGCCTGTTTGCATTTTTGCAG
Seq C2 exon
AGCATTGTATCCAAGCTGGGACCCCTGCCTCGTATCCTGAGGGATGTCCACACAGCACTGAGCACTCCAGGCAGTGGGCAGCTCCCTGGCACCAATGACCTGGCCTCCACACCAGGCTCTGGCAGCAGCAGTGTCTCAGCTGGGCTTCAGAAGATGGTGATTGAGAATGATCTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055226:ENSRNOT00000080760:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.512
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120043=DUF3498=PU(9.1=78.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGCAAAGAGGAATACATGT
R:
CCATCTTCTGAAGCCCAGCTG
Band lengths:
356-1879
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]