BtaINT0046523 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008232 | DAB2IP
Description
Bos taurus DAB2 interacting protein (DAB2IP), mRNA. [Source:RefSeq mRNA;Acc:NM_001144082]
Coordinates
chr11:92644936-92647859:+
Coord C1 exon
chr11:92644936-92645080
Coord A exon
chr11:92645081-92647622
Coord C2 exon
chr11:92647623-92647859
Length
2542 bp
Sequences
Splice sites
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
3' ss Seq
CATGACCTGTCCCCACACAGCGT
3' ss Score
8.34
Exon sequences
Seq C1 exon
GGGAGTTCATCAAAGCGCTGTACGAGTCAGACGAGAACTGTGAAGTGGACCCAAGCAAGTGCTCGGCCGCTGACCTCCCCGAGCACCAGGGCAACCTCAAGATGTGCTGCGAGCTGGCCTTCTGCAAAATCATCAACTCCTACTG
Seq A exon
GTCAGTGCTGCCCCCACGCCCACTCGGCCTCTACTGCCCAGGGTCCCATCCCACATCCCTTCTTCTCCCCCCATCCTTCTGTGTAGGCTGGGTGCCTAGAGCATGCTGGGCGCTGGGCTGGCCCCTGTGAGCGTCATCCCATCCCGAGAGCTCGGTGAGGCGCTCTCCTCTGTCATTCCCAACAAGAGAGCTGAGGTTTAACAGGGAGAGGGCAGGTAACACAGCTTCAGAGTCGGTGCCCTGGGGTTGGAGTGCACCTTTTTCCTGACCCCGCTGAGTCCGACTGGTCCTTTCTGGGCTCAGACATTGGAGTGTTCCAGAATGTGTAGGTAGGATGTGCATTGTTGAGGATTCAGACCCAGCAGTCCCTTACACATGCTGGACAGTGGGTACTGCCTGGCACCATTGTAGGTGCTACGGCTGGACAAGAAGCCAGACGCACAAGGCTCTGCTCAGGCACCCCTGGGGTGGGTGGGTGGCTTCACCTGGCCATGGAAGCTGGTGCTCAGGTCACAGGCTTGGAGTGGCCCCATCACGCACCTGTGTGGGGCCTGGACACTGGGTGGGCCTCCTGCTGGGACCATAGAGAACTGAGGAGGAGGACTGGCCTTTACTAGGACCGAGTTCTGCAGGCCCCTGGCGGCCCCAGAGAGGAGTGGAAGTGTGCAGGGCAGGCTGCTCTCACAGGACTGGGCCACAGTCAGTCCCGGGCCATTCCGTGCAAGATGAACGTCCCGGCACATGTGAATGGTGGTCACTGAGCTAGTACAGCCTCATCAGAGACGGCTGTGTGACTGTCCAGGGGACCATACTACCAGCCCCCAGGAGTGGCTTTATTTTCACACTGGAGGAGCTGCCCAGGCTTTTTCCTCGGTCACTGCTCCAGCTCAGGACCTACGTTCCCTTCCCCACCCGAGTGGCTCTCCTAGCCCCGTTCCCCCGTCCCGCCTCTGGCCGTAGCTTGCTTCTCTCTTTGGTTGTGTTCTTTCCTGTCCTGTTGGAGGGCCTATGTCTGGCTCCCCTTTGTGGCCCTCCTTTATTATGTCACCAGAGATGGTAGGCTCACCCCCGCAGCCACCCTGGCTCACAGCTCTGCTCCCATCAGAGTGCCCTGAGCACCCCAGGGCTGGGCACCAGAAGGACCTGGCTGCTCCCGAAGGACAGGCACAGGCAGAGGCGGGCCTGCGAGGAGAGCGACAGCCTTGGGTCAGGGCAGAGCCGGCGGGGTCGACGCTGGCGGCCCCGGTCCCCCTGCCCCAGGGTTACACAGGGTGCTCACTGGGCCTCCCTGGCCCTTTGGGCTGAGCTGAAAATGACCCTTGGCACCGGGCCAGGAGGGACAACCAGAGAGTTTGAAGTCTGGAACACACTTCCCACCCTTGGGCTGTGTTTTCACCCAGGGCGGGCCGGGTGTGGGACACGGGGAAACATATCCGTGGACAATGGTTTTCCATTTCCTCTTTCTGGCGTGTGTGCAGGCCCCTCTCAGTTCTGAACGAGGCCGCTGATAAATGTTATCACTCAGCGCCTGCCCCCTGCCCAGTCCTGGGCCAGGCGCTTCAGGGGCCGGGGCTCAAGGTCACCTGCCCTCACTTCCTCTCCAGCCACGTCCTTGTTGTTCAGCCATGTTCACTGCCTGAGTCTGTTGGGCCTGTTGGGCAAAAGCTTTTCAAGCTGATCAAAGCAGCTTAAGACCTTGGGGGTCCCCACCTTCGGATAGATGGCTGTGTGAACTCGGCAGGGATGGCCTTGTTCCCCTTGCGGGAGTGAGGAAACGGAAGCCTGGGGAGGGCCAGGCCCTGGGGCAGAGCGCCCTGGAGCTGGTGGGAGAGCCAAGGGTAGGCTGGGTTCAGGGAGCACCCATCTTCCAGAGTGAAAAAGATAGGAAGGCCTCTGAAAGGCTGGCCTGGTGGGGCCTCACTGAGGCAGGGTGGAGGTGCTCAGCGGGGACAGCCCCCAGACAGGTGCTGAGAGCCCTGCCCACCCTCTCCAGGTCGGCCTAGGGAGGTCGCTGCCTCCGCTTCCCTCCACACCTGAGTTAGCGAGGACCTGTGTTCTTAGCCTGTGGTTAGGATCCGCCCCTCGTCTTGATCACCCAGCTCTGCTGAGAACCTCAGATCCTGTAACGTTATTGGAGCAGAGGGGGTCCCTCTCAAAAGCCGGGGACAAGAACCGAGGAGCGGTGCTCTGTTTCTGCCACGTGTCCCTCCCTCTGCAAAAGACCCCACGCCTGCCAGGTGGGGCAGGGGTGAAGCCCCATGGGGCCTGGCCCCAGTGCTGATGTCATCTCTCACTCAGGCCCTCTGAGATACCCACCAACCGCGGCCTGGGCATCCCTGCCCTGTGGTGGCCTGGCCCTGCCCAGCGGATGGTGGATGGTGGAGAAGTGGGCTCAGAGAACTTGGGCATTGGGCCGTCATGTAGCCATCAGGGTGGGCGCGGGACAGAACTCGGTTCCATCAGACCCAGAACCAGCTCCCTGCTCTGGTCCCAGCCTGGCGACTGATTCCCCGACCCCCCCCCATGACCTGTCCCCACACAG
Seq C2 exon
CGTCTTCCCCCGGGAGCTCAAGGAGGTGTTTGCCTCTTGGCGGCAAGAGTGCAGCAGCCGCGGCCGGCCGGACATCAGCGAGCGGCTCATCAGCGCCTCCCTGTTCCTGCGCTTCCTCTGCCCAGCCATTATGTCCCCCTCGCTCTTCAACCTGCTTCAGGAGTACCCCGACGACCGCACCGCTCGCACACTCACCCTCATCGCCAAAGTCACCCAGAACCTGGCCAACTTTGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008232:ENSBTAT00000032823:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(27.9=100)
A:
NA
C2:
PF0061614=RasGAP=PD(44.2=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development