DreINT0054621 @ danRer10
Intron Retention
Gene
ENSDARG00000069484 | dab2ipa
Description
DAB2 interacting protein a [Source:ZFIN;Acc:ZDB-GENE-081104-516]
Coordinates
chr8:12120429-12124024:-
Coord C1 exon
chr8:12123880-12124024
Coord A exon
chr8:12120666-12123879
Coord C2 exon
chr8:12120429-12120665
Length
3214 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATT
5' ss Score
5.99
3' ss Seq
TTATTGTCCTTCCACTCTAGTGT
3' ss Score
8.88
Exon sequences
Seq C1 exon
GTGAGTTCATTAAAGCCCTGTATGAGTCAGACGAGAACTGCGAGGTGGATCCGTCTAAATGCTCCTCCAGTGACCTGCACGAGCACCAGAGCAATCTGAAGATGTGCTGTGAGCTGGCTTTCTGCAAGATCATCAACTCTTACTG
Seq A exon
GTAATTCCATCAAATTCACCTCTCATATCAGAGTCTGCACACAGCATAGAGGAGAGTAGATGTGTCCTATAGAGCAAATTCCTTTAAATGCTCCTCCCTTTATAGGAATTTGCTCTATAGGAAACATCTTCAATTAACACATTAAAGGATTGTTTCACCCAAAACTGAAAAATCTGTTATTAATTAATCACTACCACCACGTCATTCCAATCTCCTGAGACCATGTTCTTGTTCATCTTCGTAACACAAATTAAGATATTTTAGATGGAATCCCAAGCAGCGATGGTCCTGACACACTCAAAGTCCAGAAAAAGTAACCAAAAACATTGTCAAAACATTCCATGTGATTTCAGTGATTCACAGTGTAATTATGAAAAGCTCCAAGAACACTTTTGGGTACCAAAATTACCGGTAATTACAACTTTATTTGCGTACAGTATATCTTCTCTCACACATTGGGACATGGTGCGCATTTTATAAAGGCTTTACAACTGTGAGCATGGTCTTGTTTTAACAGGTTATTTGGTGCACAAAAGTGCTCTTGGAGCTTTGTATGATTGAACCACTGACCTTCGGTGTCTGTGGAGGATCAGAGAGCTCTCAGATTTCATAATTAAATTAAAATATCTTAATTTGTGTTCAGAAGCTGTACAAAGGTATCAGGGGATTGGAAAAACATGAGAGTGAGTAATTAATTACAGAATTTTCAATTTTCGGGTGAAATAATCCTTTAAAATGGGTAGTTCCAATATTCAATATATCCAATATATAAGGTTCCAGATAAAACCTCCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTATATATATGTATATATTTATATATATATATATATATGTATGTATGTATGTATATGTGTGTGTGTATATATTCCCCTGTTATATTATTATTGTTTTTTTAGTTTCTTAATTTCATGCTGATCATGATTGCCAATTTTGTCTTTTGTCCAAAAAGCCCATGATGCCTGCCTGGCATACTAAGATTAATAAGAAGTGAGAGGTCTCCATCTGTCCTCACAGAGACTGTGCTATTCCTCAGTCATCACCTACAAACAGTATCTGCAGAAGCATGCTGAGAAATGAAATTAGTCTCTCCTGCAAAGGCCTGGTGCAGGGTATCCCTTCAGGGGAATGCAATTTTTCTGCCTTCGAGGGGTATCTTTAACTGAATCTTGTTGCGTCTCACTGTGCTATAGTTTTTATGTTCCGCTGTCTTCAAAAAAGAGCAACTTAAACGGCAGATTGTGGCGAGCCGGAGGCCGCAGCAGGAGACGTCCTTAAGGTGCTGATGTGAAAATTGAAGGCGGACGTAACGATTTAAGGGGGTAGCAGTGAAAGCGTTGTGGGAGACGACGTGTCCCGTGTTGTTAACACTTAATTAAATGCACACAGTGACTGTGATGCGATGTGGGAATGCTGAAGCGGGTGGGAGTTTTGTTGGTGTTCGGCCTGTTTGTTGTTAAACAGTTACTCAGCAGTGCTAGACAACATTTCGGCTCACTAGCGCTGGTTTACAGTCAGCATTTATCGCCCTCATGTTGTTCCAAACCCATGAACTGGTATTTTTAGCTGTGGTTATATCAACTTTTAAAGATTCAGCTAAAATGAACATTTGTTGGAAGTGTTTAGAATACATTACAAGAGGGGAAGTGCCCTTGTTTATTTTATACTGTTCTCCGATGTCCACTTATAAATTTTTACATTAAAAAAACAGAAATACATTATTTTAATGTGTTATTTTGCTATTTTTCTGGCCTGTTTTGAGCTCATTCATTAATGGGCATTGATTTAGGTTTAAAACACATAAAAACTCTCCACACATAAAAACTCTCCACACATAAAAAAACACATCTGCAATGATCTGACAGACAAAGCAATAGGGAATAGTACTAAAAGATTACTTAGTGGTGTAACATTAGTCTTGGATCCAATGTAGTTGGTCCAAAGCCATCTTTTAGTTTCAAACATTCTGAAATTCTAAGCATCGAGATACGCATTGTTTGTAAACAAATCTGCAGTAAGATGAAGTGAACAAAGCAACAAGTTTCAATGGACATGGTCTGGAGCTTCATTAAAAATAAAGTTCATCCACACTTTCCAAAAATGTGATCAGACGTTGTAAAATTGTGTTGTCTTCAGAGCATCCTTAGCATTTGATTTCTGCATAGACTTGCATTTGTCTCTCTCATTATTTATTAACTACATCATAATTCGTTGGATCGAGCTAAACAAACAGAGTTAAGCCACACTGTTTTGTTAATTATTATGTACTATAATGTAAACCTGTATTTTTTTTCCAGATTAGCTTCAAATTAAGCTGGTTTTAGACTAATGAGAAAGTGTTGAGTTCTGAAACGTACAGGATACATTTATAGCAGCTCTGCACAAGAAGTTTGGCCAAAGTAGACATAGTCGTGCCCAAATGAGCCTGATTTTTCTCAAGGTTTTTTTTTCCCTTCACTTACGTCAATTGGTAAAGTTTGTTCCTCGCCACTGTTGCCACTGGCTTGCTGGGTTTGATTTTTGTGGAGCTGCGTATCAGTGGATTTGCTCTTTAGTGTTTGGACCTTCAGCTGTGAATTAAACCACACTGAACTGAGCTAAACTGAACTTAAACTCTGAAAACTGAACTGACACCGTTTCAATTTACTGGAACTTCTATGTTAGGCTGCTTTGACACAATCTACATTGTAAACGCGCTGTAGAAATAAAGATGAATTGAATAGTACAATGAGCTCTATTCCCCCTGTTACAAAGCAATGATGTTGGAAAAGAAAGCCCAGCCTCCTACTTAATAGTCCAAATTATTTGGAAGATTATCAACAAACTGAAATAAAAGTCTCAGCAATTTCTGGGTCTTCTAGCATTTATGGGATTTGTGATATCTCACTTTTAACCCTATTGATGTTTTTTAACCATTTAACTGGCATGCATTGTAACTGCCTGGTTAGCCTTTTGTCCATAGGTTATAATTAAAACAAACTCAAAACAACTCAACATTTGCGTGCCTTAGAATGATGTCAGAAACACAATTTGACCAAAAAAAAAAGGTTTAAAAATGTTTAGAGTGGAAAAGTTAAAGGGTTAAAACAAATTTTTGTTTTCTAATCAATCAAATTATTGTCCTTCCACTCTAG
Seq C2 exon
TGTGTTTCCTCGGGAGCTCAAGGAAGTGTTTGCGTCGTGGCGGCAGGAGTGCAGTAGCCGAGGACGGCCGGATATCAGTGAACGCTTGATCAGCGCGTCGCTCTTTCTGCGCTTTCTGTGTCCTGCCATCATGTCGCCGTCACTCTTCAGCCTCATGCAGGAATATCCAGATGACCGAACTGCCCGTACACTCACACTCATCGCCAAAGTCACACAAAACCTTGCCAACTTCACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069484:ENSDART00000135812:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(27.9=100)
A:
NA
C2:
PF0061614=RasGAP=PD(44.2=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]