MmuINT0046477 @ mm10
Intron Retention
Gene
ENSMUSG00000026883 | Dab2ip
Description
disabled 2 interacting protein [Source:MGI Symbol;Acc:MGI:1916851]
Coordinates
chr2:35713106-35715505:+
Coord C1 exon
chr2:35713106-35713250
Coord A exon
chr2:35713251-35715268
Coord C2 exon
chr2:35715269-35715505
Length
2018 bp
Sequences
Splice sites
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
3' ss Seq
CCATCTTTGTTCCTATGCAGCGT
3' ss Score
9.37
Exon sequences
Seq C1 exon
GTGAGTTCATCAAAGCTCTGTATGAGTCAGATGAAAATTGTGAAGTGGACCCAAGCAAGTGCTCATCCGCTGACCTCCCTGAGCACCAGGGCAACCTCAAGATGTGCTGTGAGCTGGCCTTCTGCAAGATCATCAACTCCTACTG
Seq A exon
GTTAGTGCCACCTGTTGGGAGCTGTGTGCTCCTTTTTTGGCCTAATCCCTCCCTTCCATTCATCTTGACTATCTTTTTTTGTCTGAATGCCCCCACTCCTGCCCTGGGTGCCAGCATCTGATTCCACTGGGTTGTTGGACGGCCAGGTTCCTGTCACGCCCCTTTTTGAGTTCTTAAATATAGGAAAGCACTCAAGAATACCTGTAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTAAAACCTGGAAATGGCTGTTTCTCTACCTACAACTGGTGAGCACCCTGCACACGCAGAGGCGAATGTCAGTGCGCCGGTGCAACATGGAGCTAGAGCCCTGGTGTCCTGGCACTGCTCCAGTGGCTCCTCATCTGCCTGTCCCTGACGATTATTACCCTTGTATCAACTGAGGGAGCACTAGCTAGTCCTCTGACTGAAACAGAGCAGAGAAGAAAGGGGTAGTATTACAGTAGAAATGAGTTACTTGTTTGGGGCTACAAATGGGGCTGGAATTCGTTCCTGGGAAGCTTCTCTTAAGGCCGGTTTCCTAGGCACCTGCTGCATTTATGACGCCTTGCTGGCCTGGTGCTAACCCTGGTTGTGCTTAGCACACATGGGACTGACCTTGTAGGCCTTGCTGCCAGCCACAGTGCTGAGTTTGTATCCACATGAGAGAAGCTACTTAGGTGCCTGTACCATCATCTCAGCTCAGAGCTATGCTCGTCCTGCCCAAGCCACTCCAAAGCCATATCTCCACATTTGTCTGGTTCTTTCTCCCGTGTCGTCTCCTTTGATCTTACATAGTCTGGCCCTACATGTAACCTAATCGTCCATACCCTTGCAGTCAGAAGCACTAGCTCAGAGGTGCCACAGGAAGTGCTTGCCTTTCCCAACAGATAGGCAAAGGCAGGCCTCCTGGGTAAACCGTGACCTTAGGAAGGGGTCAGTGTGGCCAGTGCTTGTGGTAGTGCCCACTTGTCCTGGTCCCTCAGCTTGTTTTGCATGCGATGCTTCTCTGGGGTAAGGGGACAATTGTAGAGCCTTGAGCACCCTCGGAACACACTGTCATCTCCCCACTAAGCTGCATTCTCAACCTTTGCTCTCCATTCCATTGGAAGACCTTCTGTGATAGGAGTCTCTTCTTTCTGTCATCTAGAAGAGACTTCTCTTCTGGACAAGACCATCAGTAGACATCACCTGGCAGTAGACTGCCTACCCCCATTTCACTAGGCAGCCTTGCTGACTCTGCCTCATTTATTGCCCCACGTCCTGTCTGCTGGGCTCAGGACAGAGTCGGTAGTAGACTAGGTCCAAGGAGCACTGGGGTCTGGTATGCCCTGGGGTGAAAAGGTAGGAAACTCACCTAAAGTGGGTATTCAATGGAGCCAAGAACTCTGTGCTAGTGCCTTCTTAACTGTCACCCCAGGAAAGTTTGTTTCTCTCCCCAGCTAGTTCATGACAGACTGTGTTCTCGCTAGCTGGGGAGACTCCCTGTCCAGTCATCATGAGCTCTGTGGGAAACCCAGATTCCTATGACATCATTCAGGCAGAGGGATGAGTCTTGATAGCCAGAAATAGGAGCCCAAGGAACAGCGATCTGCCTGCCCTGTGGCTTTCTTCATGCCTCTAGACCCAGAAGCCTATTGTTGGAGCAGAAAGAGGTGCTCCCCTTGGGAGGACGAGCGCGATTGTAGTGGCATTCTTGCTATTTATATTGGCATGGAGCCAGTTCCACCCGCCTCCACGCTCAGCACACTTGGACCCTTCACTGAGAGTCTACCCTGTCTGCTGAGCAGCCTCTCTGCCCACCCTGGCTGGCTGTTTCCTTAAATGTCTGAGATTTCGTGGCTGCAGAGCCCTGAGCTCATTCCACCATCAACATAGAGCTGTGGTTGGAACTCAGGGTTCCATGTGACTCAAACAGATCTGACCCCCAGGCCCATCTTTGTTCCTATGCAG
Seq C2 exon
CGTCTTCCCACGGGAGCTTAAGGAGGTGTTCGCCTCATGGCGGCAGGAGTGTAGCAGCCGAGGCCGGCCAGATATCAGTGAACGGCTCATCAGCGCCTCCCTCTTCCTTCGCTTCCTGTGCCCTGCCATCATGTCACCCTCGCTCTTCAACCTGCTTCAGGAGTATCCTGACGACCGCACGGCTCGCACCCTCACGCTCATTGCCAAAGTCACCCAGAACCTGGCCAACTTTGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026883:ENSMUST00000112983:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(27.9=100)
A:
NA
C2:
PF0061614=RasGAP=PD(44.2=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types