RnoINT0044841 @ rn6
Intron Retention
Gene
ENSRNOG00000055226 | Dab2ip
Description
DAB2 interacting protein [Source:RGD Symbol;Acc:621686]
Coordinates
chr3:15042465-15044833:+
Coord C1 exon
chr3:15042465-15042609
Coord A exon
chr3:15042610-15044596
Coord C2 exon
chr3:15044597-15044833
Length
1987 bp
Sequences
Splice sites
5' ss Seq
CTGGTTAGT
5' ss Score
6.32
3' ss Seq
CCATCTTTGTTCCTGTGCAGTGT
3' ss Score
9.26
Exon sequences
Seq C1 exon
GTGAGTTCATCAAAGCCCTGTATGAGTCAGACGAAAATTGTGAAGTGGACCCCAGTAAGTGCTCAGCCGCCGACCTCCCCGAGCACCAGGGCAACCTCAAGATGTGTTGTGAGCTGGCCTTCTGCAAGATCATCAACTCCTACTG
Seq A exon
GTTAGTGCCACCTGTTGGGAGTTGTGTGCTCCTTTGGGGGCCTGGGCTTTCCCTTCCTTTCGTCTTGACTGTCTTTGTCAGGATGCTTCCACCCCTGCCCTAGTGCTAGTGTCTAACTCCACTGAGTTGCTGGACAGCCAGGTCATACCCCTTTTTGAGTTCTTAAATATAAGAAAGCATCTGTAGGGTGTGTGTGTGGTCTGGAAATGACAGTTTGTCTGTACCTGTGACTGGTGAGCACCCTACACATGTAGAGGCCAATGTCCATGTGCTGATGCAACATGGAGCTAGAGCCCTGTTGTCCTGGCGCAGCTCCCATGGCTCCTCACCTGTCTGTCCCTGGAGATTATCACACTCGAATCAATTGAGCAGGGATGTGTACGAATGCCTAAGCAAGCCCTAGCTAGTCCTCTGACTGAGACAGTAGGAATGAGCCACTCATATTGGGGCCACAGCCGGGGCTGGGATTCATCCCTGGGAAACTTCTCTTAAGGCTAGGTTCCTAGGCTCCTGCTGGCTCCTGAGCTGCATTTATGACACCTTGCTGGCCTGCTGCTAAGCCTGGTTGTGGTTAGCATACATGGTCCTGTCTCTGTAGGCCTTGCTGCCAGCCATAGTGCTGGGCTTGTTTCCACTACCCAGTCACCTGTACCATCAGCTCAGCTCAGAGCTCTGCCTGTCCAAGCCACTCCAAAGCTAGCTGTATCTCCACTTTTGTTTGCTTCTTTCTCCCATGCCGTCTCCTTTGGCCTTACATGGTCTGGCCCTAAGGCTTTATGCCCCCACCCCCACCCCCCGTGGAACCCTTCATGTCACCCAACCATCCATACCCTTGCAGCCAGGAGCACCAGCTCAGAGCTGGCACAGGAAGTGTTTGCTTTTCCCAAAGGATACACAGAGGCAAGCCTACTAGATGAGCAGTGGCCTTAGAAAGGGGTCAGTGGCCAGTGCTTGCGATAGTACCCTCCTGTCCCAGTCCCTCAGCTTGTGTTGCATGAGATGTCCCTCTGGGGTAGGGGGACAACTGTAGAGTCTTGAGCACCCTTAGAACACACTGTCATCTCCCTGCTAGGCTGTATTCTCAGCCTTTGCCCTTCATTCCATGGGGAAGACCTTGTGTGGACAGTCTCTGTTTCTTCCTTCTGCATCTGGGACAGGCTTTTCTCCTGGACAAGACGTCAGTAGACATCACCTGGCTCAAGCATCAGGCTGGAGGGCTGCCTGCCCCTGTTCATAGGCGACTTTGCTGATTCTGCCTCATTCTGCCACATGCCCTGCCTGCTGGGCTCAGGACAGAGCCAGTAGTATATTAGGTCCAGGGAGCACTGGGTCTGGTCTGCCCTAGGGTGAAAAGGCAGGGAAGGTGGTGCCCGCTGTGCCTTCGTAACTGTCACCCTAGGAAAGTCTTTATTCGTCTCCCCAGCGAGTCCACCACAGTGTTCTCACTAGCTGGGGGTACTCCCCTGCTCAGTCATTTTGAGCTCTGTGGAAAACCCAGATTCCTGTGACATCATTCAGGCAGGGTCTCGATATGAGTCTCGATAGCCTGAAGTGGGAGCCCAAGGAACAGCATCTGTCTGCCCTGTGGTTTTGTTTTCTTCATGCTTCTGGACCCAGAAGCCTAATGTTGGAACAGAAAGATGTCTTTCTCCTGGGGAAGAGCTGTTGTATTCCAGTTCCGCCAGCCTTCATGCTTAGTGCACTTGGACCCTTCACTGAACCTACCCTGTCTGTTGAGCAGCCTCTCTGCCCACCCTGTGCTGGCTGTGTCCCCCACAGTGTCTTAGAGTGCATGGCAGCACTGCCCAGCACACATCTCTGCCTAGTGGACAGTCATCCGGCTTGGCTGCAGAGCCCTGAGCTCGTTCCACCATCAGCATAGGTGTGGGTTTGGGAATCGGGGTTCCATGCGACTCAGAAACAGATCTGGCCCTGAACTGTCCAAGGCCCTACCTGACCCCCCAGGCCCATCTTTGTTCCTGTGCAG
Seq C2 exon
TGTCTTCCCTCGGGAACTTAAAGAGGTGTTCGCCTCATGGCGGCAGGAGTGTAGCAGCCGCGGCCGGCCTGATATCAGTGAACGACTCATTAGCGCCTCCCTCTTCCTTCGCTTCCTGTGCCCTGCCATCATGTCGCCCTCGCTCTTCAACCTGCTTCAGGAGTATCCTGACGACCGCACAGCTCGCACCCTCACGCTCATCGCCAAAGTTACCCAGAACCTGGCCAACTTTGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055226:ENSRNOT00000080760:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(27.9=100)
A:
NA
C2:
PF0061614=RasGAP=PD(44.2=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTGTATGAGTCAGACGA
R:
AGGTTCTGGGTAACTTTGGCG
Band lengths:
354-2341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]