GgaINT0124831 @ galGal3
Intron Retention
Gene
ENSGALG00000001419 | DAB2IP
Description
NA
Coordinates
chr17:9297901-9301771:+
Coord C1 exon
chr17:9297901-9298045
Coord A exon
chr17:9298046-9301534
Coord C2 exon
chr17:9301535-9301771
Length
3489 bp
Sequences
Splice sites
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
3' ss Seq
GTGTCCTCCTGTCATTTCAGTGT
3' ss Score
8.85
Exon sequences
Seq C1 exon
GGGAATTTATCAAGGCTCTCTATGAATCAGATGAAAACTGCGAGGTGGATCCCAGTAAGTGTTCATCCTCGGACCTCCCTGAACATCAGGGCAACCTGAAGATGTGCTGTGAGCTGGCCTTCTGCAAAATCATCAACTCCTACTG
Seq A exon
GTCAGTACCCTGTGGGCGTCACTCCCCTCCTCATACTGCCACAGGGGAGGGCTGTGGTGTTGGGCTCAGGCCACGTCTGTCTGACACAGCCTCGCCAACCCAAAGGGTACCCGGGGGGCTTCTGTGTGAGGCTGCCCAGGGGGACTGGGCTGAGCAGGGTTGGCACAGGTGGTGGCAGGCGCACCTGCAAAGATGGGCAGTGCCTTGTTGAGCTCCTGTGTGCCTGGCTGGGAATGGGAGGGCTGCTGTGCACAGAAGAGCACACTTTCAAGGACAGATTTTCTGCTGAGCTGGTTTAGTTTGGGGATGCAGTTCCACACTGCCTTCAGGGCTGAGTGCCCATTGCATTTCAGCGGGTGGTGAAGGGTCACTGCAGCACAGACAGGACAGGGTGGTAGAGCCAAGGAGTAAGAAATGTCTTTGCCAGGGTGACCAGTTCAGAGAGGAACTTGATGCCTACCGTGTATGAAAGTCTGGAATAAACAGCAGGAATGCATGTCCTGAGTCTCCCACCCATGTCACAAATGTGTGTGTGCCAGGTGGGTCAGTGATGGACTGCCTGATGCCCCAAAGCAGCCACTGAAGTTTTGAACCCCCCTGCAGCAGGTAGGGTCTGTGGCACTCCTGGTGCAGCAGGGAAGCTGCAGCAGCACAGATAGCTTTTGTGGAGGCAGACATTCTCCTGTAGCAGAGTGCTGGAGCAAGGACGCTGCTGTTAGTGCTCTGTTGCTGCTGTTAGTGCTCTGTTGCTGTTTGGCTCAGCATCCTGCATTCCTCAGGGTTAACCCTTCCATGTCCTTGCTGAGGCAGCCTGCTGTGCAGCTTGAGGCATTTCCTAGCTGTTCCTGCAGCTAGCAGAGACAGGCCTGAATGTGCAGACTTGACTGGAGTGAGGCAGTGGTGTGCTGTGGTGACTGGTGATGCTGGTTTGTGCCCCTCAGTGCTGGAGACTGGGAGGCCCAGCAGCCCGTGGGTCTGCTGCAGATGGTGCCTGGGAGGGGGAGAAATGTGCTGATGACCCTCTTTAAGTAAAGGAACAAAAGTGGTTTCTCTGTGTGTCTTGTTAGCAGACGCAGAGGTTTTTGTCCTGGCTGAATAGAACAGACATTTTTATCCTTCTGCTGCATTTGCAGTGTTCCTGGTTGAAAGTCTGGGATTAGTGGTTACTGATGTATTTTGTAGCAATGCTGTTGTTGCCAAACATCAACCAAGGATTGTCTTGGATGGAGGAAGGAAGTCTTTGGTAGTCAGAACTCCTCATTTTCTTCCCTATCCCAGCTGTTGAGTTAAGGTCTGAAAACTCACTGTATATAATCCCCCTGGATAGGGACTGTGCTGTCTTACAAGCACAGAAGGAAGGGAATTGCTTTTCCTGATGTTGCTCAGGGAGAGAACAAGCAGCAAGAGGCTCATTCACACTTCCTGCATCCACCACAAATAGGCAGAAGGGCGCAGTTCTGTGCAGGTACCCCATACCTTAACTGAGCCAGTTAATGACTCTGACTCACGAGTTGTGCTTACCTGCTCTCCCAAGAGGAGTTCACTGCTTTTAGTCACCGGCGGATAATAATTGTTCAAATTAATGCCTTCCTAAAAATACCCAAAGCAGCACTAAAAGGTTGGCCTAAAAATAGGTCTGAAAAGTGACGTAGAGAACGTTGGGAATGTGTGGAAGGTTGGTTCCTCCAGTCCCACTGCTGCGAGGAGGGCTGGAGCAGCTGAGCTGCAGCTCCTTTGTGCTCAGCAGTTCTTGGGGATTAATTGGGCTGATGTTGAGAATTCAGGATTGGCCAAGGGATCCTGACAGCTAACGGTCTTGCTTTAAATAGAGTGCCAGGAGTGTGTGCTCATCTGCCAGAGAGTCAGAGAGAGGGAAGAGGTTTACAATAACCGAAAATTGTTATAATTATGACATAATTTGGACATCTGGAAAGTTTCGGCGTAAGCAGAATTTCAGCATGTGGAAGCTCGTTACTGGAAACTTGGGTAATGAATTACGGGCCCGTTTGTCACATAAAGCCAGCTAACTGAATTCCATACGCCATTACACAATTAAACTTTTATGGTCTCGCAGCCCGTGACAGTGAGCAGTACTCAGGGCTGCATGCTGCTGGTGCATGCACTTCCAAGGGCTTACTTTCCAGTAACTGTACAACCTGTCCTGATCACTCAAGCCTTAAATTGCTTAAAGGATTCTCCTATTTGTGGGCAAATACCATGAAGTAAAAGGGCTTTGTCCAATTGTACGAATCAAGCTAGAGAGAGAACTTTTTCAGCCAAAGATGTTGGCTAGTGTTACTTATGAAGCACAGGGCAAAAGCTCATGAGAGTGAAAGCATGAATCCAGTATGGAGCAGAAGCCAAACACAATGGCAGCGTTTGCTGAGCATTGTGCTCATGTCAAGATAGAGAAAACCTCAAGCATGAGGATGTGCATCCCGTGTGCACAGCAAGCATGGCTGGGCAGGCTTCTGCACCAGGGAAGCAGGACAGCATCTCTGGCAGCACAGCACACGTGGCTTTCTCTTTGCAACAAATGTGGGGGTCAGTAGCAGGGCAGTCAGTCCCAGAGTGGGGCACGTGGCTGCTGGAAGCCAGCTCAGATTGCTTCGCTCATCCCACATAGTCCCTGCAGCAAAACTGGGAAAACATCCTCTGAAATGGATGTTTGTTAAGAAAATGTGTGACCTAAAATGGAGCCTGACCTCCTTCGGTTCGCTTTTATGCCATCCAGCTCTGTAGGTGAACGGCTCTGGGTTTCAAAGACAGTGGTTGTGGCCAGGGCAGGCGCTGGGGCCGGGGAAGGGGTTGGTACTGGGGGCCGCTGGGGACCCATTGTCAGCCTGCTCCTGCGTGGGAGTATCCAGCTGCATAAACAGCCTGTGCTGGGAACAGGATAAGGTGTGAACAGGGAGCTGGGAGGAGAGCGGGCAGGCGGCTCCTTATTGTACTGATAAGGGCTGCTGGCTTGGGGGAGGTCTGGTGTCTTGGGAAGCCTGGATGAGGTTGGTGCAGTTGCAAGGCTGGACTAACTCCAGTGTGGCTCTGCTTTGCCCTTGTCTCCATGGGATCTGCTCCAAGAGCTTGAACAGGAGCAGTGCAATTTGCACAGCCCTCCCACCAAGCACCAGCTGCACCAGCAACCCTGGTCCACCCCCAGTGTCCCGCAGCACACAGGCAGTGCCCCATCTCTCCAGGGTGGTGCACACCACGTAACTTGTGATGATGAGCTGCTTGGTTTCCCATCTCTCTTCCCAGTTACTGGAGGTTTTTGCTTGGCTTTTTCCTGTGTGATTGGAATATCCTAATGGATGAAATGGAGGAAAAAAAAAAGAGGGAAAAAAGAAAAGACAGAAGCCTGTGAGTGGAGTAAGGGTCTGGCTGTCATACCCAATGGCTGGTACACAGCATGTTTAGTTATTACTGTGCATCAATTCAAACACCCTGGCCTTGAACTTACCATCCCTGTGTGTCCTCCTGTCATTTCAG
Seq C2 exon
TGTCTTCCCAAGGGAGCTCAAAGAAGTTTTTGCCTCGTGGAGACAGGAGTGCAGCAACCGTGGCCGCCCAGACATCAGCGAGCGACTGATCAGTGCCTCCCTGTTCCTCCGCTTCCTCTGCCCAGCTATCATGTCCCCTTCCCTCTTCAGTCTCCTGCAGGAGTACCCGGATGACCGCACTGCGCGCACTTTGACCCTCATTGCCAAGGTCACCCAGAACCTGGCCAACTTCGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001419:ENSGALT00000002162:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(27.9=100)
A:
NA
C2:
PF0061614=RasGAP=PD(44.2=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]