HsaINT0044768 @ hg19
Intron Retention
Gene
ENSG00000136848 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:17294]
Coordinates
chr9:124526014-124529009:+
Coord C1 exon
chr9:124526014-124526158
Coord A exon
chr9:124526159-124528772
Coord C2 exon
chr9:124528773-124529009
Length
2614 bp
Sequences
Splice sites
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
3' ss Seq
CTTTGTCTGTCCCTACACAGTGT
3' ss Score
9.59
Exon sequences
Seq C1 exon
GTGAGTTCATCAAAGCGCTGTATGAGTCAGATGAGAACTGCGAAGTGGATCCCAGCAAGTGCTCGGCCGCTGACCTCCCAGAGCACCAGGGCAACCTCAAGATGTGCTGCGAGCTGGCCTTCTGCAAGATCATCAACTCCTACTG
Seq A exon
GTCAGTGCGGTGCCCAGGTCTCCCCACCCTGTCGCCTTCCCCATCCTGTCCTTCAGTGTCTGGCACCCGCAGTGTGCCTGATGCTGCCTGGCCCCTGAGTTGTACTGACTTGCCAGTCCCCTGGCCTAGTCCCTTTTGAGCTCTCAGGTGGGGCAGCGTTCAGCATGTTGCTGTGGTTTTGTGATGGAAAGAACCTGGACACGCCAGTCTGCCGTCTCTGGTGATGAGGGAGCGCCCTTCATGTGCCGGGGGCTATTGTGGGTGCTTGGGCTGCAGCGGGAGTGAGACTGGCAGGCCCTGTGTGGGCCCCCACTTGGGGTGGGCGGATGGCTTCACCTGAGGCTCCTCACCTGTCCGTGGGAGCTAAGGTGCTCATGTCACAGCCTTGTGATGGGGCCAAGCAGGGGCACGTTGGGGGCCTGAGCACCAGGCAGGCCTCTTGCTGGGACTAGAGAATAAACAGAAAGGACTAGACTTTGAAGTAGAACGGGGTCTGCAGACTCTGCCAGCCCCAGAAAGCAGCAGGGCATGCAGCAGTGGGCTGCTTAGACAGGCCCCTCAGCAGGACCGGAATCAGTCCCGGAGAAACTTGCGGTAAGGCCGACTTCACGGCCACCAGCTTGCTCCTGGGATATATGTGTGTGATGGCCAGCCAGCCTGGTGCCGAGTATAGCCTCGTTCTGTGGTGGCACACAGGACTGTGCGGGAGGGCCTTGCTGTCAGCCCAAGCAGTGGGTTCATATTCACCCCAGAGGAGCTGCCCAGGTTTAACCTGTGTCCCCCTCCAGCTCAGGGCTTACAGCCCCCACCCACCCAAGCCTCCGTCCACAGCCTGTTCTGACACCACTCTCTCCCCGGCCTTACCTCACTCCTTGTTAGGTTCATCTCTTTCACTCACCTGCACCTTCCCCTGCATACACTCCTGCCCTTCCTGCTCCGAGGCCACACCTGGTACCCTCTGTCGCAGCCCTGATCCCATCAGGATAGGGTTGTGCCTGTGCCTAAAACATTTCCTGTGAATGCTGGGGCACCCTGGGGGCAGGTGAGCCCACCACCTCAGGACTGGGCACACAGGAAGGCCAGAGAAGTGTTTGCTGCTCCCCAAGGACAAGAAAAGGCAGGGGGAATGGGCAGGCCAGGAGGGTTGGCACCCAGGGCCTTAGCCCCTGGGCTATACAAGGTGCTTGCCTGGGCCAAATGGGCACCTCAAGATGGGCCACAAATGTGCAGCTTTCCACACCCCTGGGCCGGTGGAGGAGAGCGACTGTAGGGCCTTGAACTCTGGGAACACACTTCCCATTCCCAGCTGGGCTGTGCTTTCCCCCTCCCCCTCTTCCAGGGGGGCTGGGCATGTGACTCAGGGAAAACATATTTGTGGACAGTGATTTTCCATTTCCTCTTTCTGGCATTTATCAGAGGCACCTCTCCATTCTGGACAAGGCCATTGATAGATGTCACCACTCAACACCTGCCCCCTGTCCAGTTCTGTGCCAGGCACTGTGAGAGCCACGGCTAAAGGTGGCTCACCTTCATTCCCCGCTAGGTGTGCCCTTGATGGGTCAGCCAGCATGCATTGCAGGAGAGCCTGCTGAGCAGGCTGCTGGGCCTGTGGGGGAAGAAATTTCAAGTTGGTCAAGCCTGTTGTAGCCTTGGGGTTTTAGCCTTACGATGGCTCTGTGAGCTTGGCAGGGCAGGCCTTGCTCTCAGTTTAGGGGAGAGAAAACCCAAGCCTTCCAGGAGGGCTAGGGCCTTGGTCAGATCACCCTGAGCTCATGGCAGAGCCAAGTGTAGACTGAGTTCACGGACCACTGGGGCCTGGCCTGCCCCAGGCTGGGAGATGCATCTTTTAGGGAAAAAAGATAGGAAACCCACTTAAGGGTTGGCCAGGTGGGCCTGACCATGGCAGGCCAGGATGCCCAGTGGAACCAGGAGCCCCATTGTCTAGGGCCAGCTCTGCCGGCTTGCTCCATCACCCTGGGGCAGTCACTACCTCCCTTTCCCTCCCCATGTAGAGAATGGAGAGCTGTGTTGTCCCACCGTGTTCAGGGGTAGTCCCATCTTCTTGATCTTTCTGAGCTTTTAGGAAATCCTGGATTCCTGTGACATTATTCAAGCAAAGGAAATTAGTCTCAAAGCCAGTGATGGGAACCCAAGGAATAGTGGTCTATTCCTGTTTTCCTCACTTCCCCCTAGACCCAGATGCCTGCTGTTTGGGTTGAAAAATGAAGTAGACACTGGCAGAGAGGTGGGGAGGGCCCAGACCAGAAGCTGGAGAGGTGGTTCAGCACTGGCCCTTGGCAGTTAATTCCGGTTAGGACGGAGAGCCAGCTCCTCATGCCTCCTCCCATCCCACCTGCCCGGCCCTTCACTGAGAACCCACTGCCCGATGGGAGCCTGGGTCTCCCTGCTCCTCCTCCTGCCTGGGCACTTGCTCCAGCCACCCTGTATTGACTGCTCTCCCCAGATGGCTGTGTCCTCAGAGCTCAGACAGCGGGGCTGACCTCACGCAGCTGGCGGGGTAGAGCCAAGGTTGGAATGCAGGTTCCTGCTCTGTGCACTCCTGTCCTGGGCCCCTGCCTGACAGCCAAGCCCACCTTTGTCTGTCCCTACACAG
Seq C2 exon
TGTCTTCCCACGGGAGTTGAAAGAGGTGTTTGCCTCGTGGAGGCAGGAGTGCAGCAGTCGCGGCCGCCCGGACATCAGTGAGCGGCTCATCAGCGCCTCCCTCTTCCTGCGCTTCCTCTGCCCAGCCATCATGTCGCCCTCACTCTTCAACCTGCTGCAGGAGTACCCTGATGACCGCACTGCCCGCACCCTCACCCTCATCGCCAAGGTCACCCAGAACCTGGCCAACTTTGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136848-DAB2IP:NM_032552:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061614=RasGAP=FE(27.9=100)
A:
NA
C2:
PF0061614=RasGAP=PD(44.2=95.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)